GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20227700 [ AET3Gv20227700]	3D	61154492	61163667	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20227700.10 AET3Gv20227700.10	High	No	1236	OG0024943		Get ORF Coding potential... Type: noncoding Potential: -0.839 Folding energies... MFEI: -29.814 AMFE: -0.639 GC content %: 46.683
Atauschii_AET3Gv20227700.3 AET3Gv20227700.3	High	No	791	OG0072205		Get ORF Coding potential... Type: noncoding Potential: -1.302 Folding energies... MFEI: -22.465 AMFE: -0.566 GC content %: 39.697
Atauschii_AET3Gv20227700.8 AET3Gv20227700.8	High	No	1036	OG0024943		Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -30.058 AMFE: -0.645 GC content %: 46.622

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).