GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20230400 [ AET3Gv20230400]	3D	62231079	62240785	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20230400.2 AET3Gv20230400.2	High	No	427	OG0072215		Get ORF Coding potential... Type: noncoding Potential: -0.497 Folding energies... MFEI: -21.616 AMFE: -0.546 GC content %: 39.578
Atauschii_AET3Gv20230400.28 AET3Gv20230400.28	Low	No	720	OG0016153		Get ORF Coding potential... Type: noncoding Potential: -0.231 Folding energies... MFEI: -27.542 AMFE: -0.674 GC content %: 40.833
Atauschii_AET3Gv20230400.4 AET3Gv20230400.4	High	No	789	OG0016154		Get ORF Coding potential... Type: noncoding Potential: -0.425 Folding energies... MFEI: -22.180 AMFE: -0.540 GC content %: 41.065

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET3Gv20230400.28	SwissProt	2021-04-01	P29056	4.81e-14

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).