Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20231700 [ AET3Gv20231700] |
3D | 64092094 | 64094372 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20231700.1 AET3Gv20231700.1 |
Low | No | 1653 | OG0024944 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -30.145 AMFE: -0.674 GC content %: 44.707 | |
Atauschii_AET3Gv20231700.2 AET3Gv20231700.2 |
High | No | 1984 | OG0009886 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -28.624 AMFE: -0.639 GC content %: 44.808 | |
Atauschii_AET3Gv20231700.5 AET3Gv20231700.5 |
High | No | 702 | OG0024944 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -28.718 AMFE: -0.620 GC content %: 46.296 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET3Gv20231700.1 | SwissProt | 2021-04-01 | Q5T5C0 | 2.48e-4 |