GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20234200 [ AET3Gv20234200]	3D	64909611	64918427	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20234200.13 AET3Gv20234200.13	High	No	1208	OG0072222		Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -25.406 AMFE: -0.596 GC content %: 42.632
Atauschii_AET3Gv20234200.8 AET3Gv20234200.8	High	No	540	OG0072223		Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -33.778 AMFE: -0.661 GC content %: 51.111

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).