GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20240300 [ AET3Gv20240300]	3D	68458627	68472201	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20240300.23 AET3Gv20240300.23	High	No	484	OG0072239		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -27.149 AMFE: -0.576 GC content %: 47.107
Atauschii_AET3Gv20240300.25 AET3Gv20240300.25	High	No	534	OG0072240		Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -29.513 AMFE: -0.643 GC content %: 45.880
Atauschii_AET3Gv20240300.27 AET3Gv20240300.27	High	No	455	OG0072241		Get ORF Coding potential... Type: noncoding Potential: -0.780 Folding energies... MFEI: -28.132 AMFE: -0.646 GC content %: 43.516
Atauschii_AET3Gv20240300.28 AET3Gv20240300.28	High	No	580	OG0072242		Get ORF Coding potential... Type: noncoding Potential: -0.793 Folding energies... MFEI: -30.328 AMFE: -0.647 GC content %: 46.897
Atauschii_AET3Gv20240300.7 AET3Gv20240300.7	High	No	1001	OG0072243		Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -27.522 AMFE: -0.647 GC content %: 42.557

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).