Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20252000 [ AET3Gv20252000] |
3D | 73084536 | 73087503 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20252000.1 AET3Gv20252000.1 |
High | No | 1306 | OG0000117 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -31.133 AMFE: -0.629 GC content %: 49.464 | |
Atauschii_AET3Gv20252000.2 AET3Gv20252000.2 |
High | No | 1690 | OG0000117 | Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -29.598 AMFE: -0.636 GC content %: 46.509 | |
Atauschii_AET3Gv20252000.3 AET3Gv20252000.3 |
High | No | 953 | OG0072261 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -30.787 AMFE: -0.594 GC content %: 51.836 | |
Atauschii_AET3Gv20252000.4 AET3Gv20252000.4 |
High | No | 1243 | OG0000117 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -27.192 AMFE: -0.645 GC content %: 42.156 | |
Atauschii_AET3Gv20252000.5 AET3Gv20252000.5 |
High | No | 347 | OG0000117 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -26.110 AMFE: -0.577 GC content %: 45.245 | |
Atauschii_AET3Gv20252000.6 AET3Gv20252000.6 |
High | No | 334 | OG0000117 | Get ORF Coding potential... Type: noncoding Potential: -1.037 Folding energies... MFEI: -27.964 AMFE: -0.595 GC content %: 47.006 | |
Atauschii_AET3Gv20252000.7 AET3Gv20252000.7 |
Low | No | 338 | OG0000117 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -27.604 AMFE: -0.591 GC content %: 46.746 | |
Atauschii_AET3Gv20252000.8 AET3Gv20252000.8 |
High | No | 368 | OG0072262 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -21.168 AMFE: -0.586 GC content %: 36.141 | |
Atauschii_AET3Gv20252000.9 AET3Gv20252000.9 |
High | No | 678 | OG0000117 | Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -27.699 AMFE: -0.641 GC content %: 43.215 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET3Gv20252000.7 | SwissProt | 2021-04-01 | Q8L9S1 | 1.0e-3 |