GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20256100 [ AET3Gv20256100]	3D	76613714	76616220	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20256100.1 AET3Gv20256100.1	High	No	2028	OG0009890		Get ORF Coding potential... Type: noncoding Potential: -0.601 Folding energies... MFEI: -32.456 AMFE: -0.669 GC content %: 48.521
Atauschii_AET3Gv20256100.3 AET3Gv20256100.3	High	No	1076	OG0009890		Get ORF Coding potential... Type: noncoding Potential: -0.558 Folding energies... MFEI: -26.022 AMFE: -0.619 GC content %: 42.007
Atauschii_AET3Gv20256100.5 AET3Gv20256100.5	High	No	1651	OG0009890		Get ORF Coding potential... Type: noncoding Potential: -0.575 Folding energies... MFEI: -31.236 AMFE: -0.674 GC content %: 46.336

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).