Atauschii AET3Gv20260000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20260000 [ AET3Gv20260000] |
3D | 78569963 | 78574662 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20260000.1 AET3Gv20260000.1 |
Low | No | 722 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.641 Folding energies... MFEI: -26.787 AMFE: -0.636 GC content %: 42.105 | |
| Atauschii_AET3Gv20260000.10 AET3Gv20260000.10 |
Low | No | 2475 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -29.131 AMFE: -0.643 GC content %: 45.333 | |
| Atauschii_AET3Gv20260000.11 AET3Gv20260000.11 |
Low | No | 2351 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.850 Folding energies... MFEI: -29.872 AMFE: -0.647 GC content %: 46.193 | |
| Atauschii_AET3Gv20260000.12 AET3Gv20260000.12 |
Low | No | 2124 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.838 Folding energies... MFEI: -29.675 AMFE: -0.633 GC content %: 46.893 | |
| Atauschii_AET3Gv20260000.13 AET3Gv20260000.13 |
Low | No | 1668 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -30.971 AMFE: -0.620 GC content %: 49.940 | |
| Atauschii_AET3Gv20260000.14 AET3Gv20260000.14 |
Low | No | 2326 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.849 Folding energies... MFEI: -29.862 AMFE: -0.645 GC content %: 46.303 | |
| Atauschii_AET3Gv20260000.15 AET3Gv20260000.15 |
Low | No | 1570 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.799 Folding energies... MFEI: -31.643 AMFE: -0.626 GC content %: 50.573 | |
| Atauschii_AET3Gv20260000.16 AET3Gv20260000.16 |
Low | No | 1530 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.795 Folding energies... MFEI: -31.752 AMFE: -0.614 GC content %: 51.699 | |
| Atauschii_AET3Gv20260000.17 AET3Gv20260000.17 |
Low | No | 2157 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -29.615 AMFE: -0.642 GC content %: 46.129 | |
| Atauschii_AET3Gv20260000.18 AET3Gv20260000.18 |
Low | No | 767 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.758 Folding energies... MFEI: -28.957 AMFE: -0.642 GC content %: 45.111 | |
| Atauschii_AET3Gv20260000.19 AET3Gv20260000.19 |
Low | No | 696 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.632 Folding energies... MFEI: -29.239 AMFE: -0.634 GC content %: 46.121 | |
| Atauschii_AET3Gv20260000.2 AET3Gv20260000.2 |
Low | No | 880 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.689 Folding energies... MFEI: -26.307 AMFE: -0.636 GC content %: 41.364 | |
| Atauschii_AET3Gv20260000.20 AET3Gv20260000.20 |
Low | No | 2056 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -30.375 AMFE: -0.642 GC content %: 47.325 | |
| Atauschii_AET3Gv20260000.21 AET3Gv20260000.21 |
Low | No | 2058 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -30.277 AMFE: -0.640 GC content %: 47.328 | |
| Atauschii_AET3Gv20260000.22 AET3Gv20260000.22 |
Low | No | 2433 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.853 Folding energies... MFEI: -29.293 AMFE: -0.647 GC content %: 45.294 | |
| Atauschii_AET3Gv20260000.23 AET3Gv20260000.23 |
High | No | 683 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -28.946 AMFE: -0.652 GC content %: 44.363 | |
| Atauschii_AET3Gv20260000.24 AET3Gv20260000.24 |
High | No | 1919 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -1.265 Folding energies... MFEI: -29.359 AMFE: -0.635 GC content %: 46.222 | |
| Atauschii_AET3Gv20260000.25 AET3Gv20260000.25 |
High | No | 432 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -1.267 Folding energies... MFEI: -26.481 AMFE: -0.639 GC content %: 41.435 | |
| Atauschii_AET3Gv20260000.26 AET3Gv20260000.26 |
Low | No | 2345 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -28.072 AMFE: -0.620 GC content %: 45.288 | |
| Atauschii_AET3Gv20260000.3 AET3Gv20260000.3 |
Low | No | 2218 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -29.995 AMFE: -0.644 GC content %: 46.573 | |
| Atauschii_AET3Gv20260000.4 AET3Gv20260000.4 |
Low | No | 1415 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.782 Folding energies... MFEI: -31.435 AMFE: -0.614 GC content %: 51.166 | |
| Atauschii_AET3Gv20260000.5 AET3Gv20260000.5 |
Low | No | 1455 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -31.986 AMFE: -0.634 GC content %: 50.447 | |
| Atauschii_AET3Gv20260000.6 AET3Gv20260000.6 |
Low | No | 2298 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -28.747 AMFE: -0.634 GC content %: 45.344 | |
| Atauschii_AET3Gv20260000.7 AET3Gv20260000.7 |
Low | No | 1358 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.775 Folding energies... MFEI: -32.688 AMFE: -0.624 GC content %: 52.356 | |
| Atauschii_AET3Gv20260000.8 AET3Gv20260000.8 |
Low | No | 1406 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.781 Folding energies... MFEI: -32.262 AMFE: -0.615 GC content %: 52.418 | |
| Atauschii_AET3Gv20260000.9 AET3Gv20260000.9 |
Low | No | 2192 | OG0000272 | Get ORF Coding potential... Type: noncoding Potential: -0.842 Folding energies... MFEI: -29.922 AMFE: -0.643 GC content %: 46.533 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20260000.11 | SwissProt | 2021-04-01 | O82204 | 9.6e-6 |
| Atauschii_AET3Gv20260000.6 | SwissProt | 2021-04-01 | O82204 | 1.11e-5 |
| Atauschii_AET3Gv20260000.21 | SwissProt | 2021-04-01 | O82204 | 9.78e-6 |
| Atauschii_AET3Gv20260000.17 | SwissProt | 2021-04-01 | O82204 | 1.03e-5 |
| Atauschii_AET3Gv20260000.12 | SwissProt | 2021-04-01 | O82204 | 8.57e-6 |
| Atauschii_AET3Gv20260000.7 | SwissProt | 2021-04-01 | O82204 | 5.93e-6 |
| Atauschii_AET3Gv20260000.22 | SwissProt | 2021-04-01 | O82204 | 9.99e-6 |
| Atauschii_AET3Gv20260000.18 | SwissProt | 2021-04-01 | O82204 | 2.62e-6 |
| Atauschii_AET3Gv20260000.13 | SwissProt | 2021-04-01 | O82204 | 7.63e-6 |
| Atauschii_AET3Gv20260000.8 | SwissProt | 2021-04-01 | O82204 | 6.17e-6 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
