GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20277800 [ AET3Gv20277800]	3D	88207931	88208685	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20277800.1 AET3Gv20277800.1	High	No	351	OG0072323		Get ORF Coding potential... Type: noncoding Potential: -0.367 Folding energies... MFEI: -54.986 AMFE: -0.728 GC content %: 75.499
Atauschii_AET3Gv20277800.2 AET3Gv20277800.2	High	No	204	OG0072324		Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -52.647 AMFE: -0.680 GC content %: 77.451
Atauschii_AET3Gv20277800.3 AET3Gv20277800.3	High	No	645	OG0072325		Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -37.426 AMFE: -0.640 GC content %: 58.450

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).