Atauschii AET3Gv20278000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20278000 [ AET3Gv20278000] |
3D | 88769887 | 88784326 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20278000.1 AET3Gv20278000.1 |
High | No | 639 | OG0003712 | Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -32.175 AMFE: -0.640 GC content %: 50.235 | |
| Atauschii_AET3Gv20278000.10 AET3Gv20278000.10 |
High | No | 342 | OG0003712 | Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -18.772 AMFE: -0.431 GC content %: 43.567 | |
| Atauschii_AET3Gv20278000.11 AET3Gv20278000.11 |
High | No | 633 | OG0024954 | Get ORF Coding potential... Type: noncoding Potential: -0.868 Folding energies... MFEI: -23.112 AMFE: -0.506 GC content %: 45.656 | |
| Atauschii_AET3Gv20278000.2 AET3Gv20278000.2 |
High | No | 1096 | OG0003712 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -27.737 AMFE: -0.587 GC content %: 47.263 | |
| Atauschii_AET3Gv20278000.28 AET3Gv20278000.28 |
High | No | 452 | OG0072326 | Get ORF Coding potential... Type: noncoding Potential: -1.277 Folding energies... MFEI: -28.429 AMFE: -0.603 GC content %: 47.124 | |
| Atauschii_AET3Gv20278000.3 AET3Gv20278000.3 |
High | No | 1135 | OG0003712 | Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -25.841 AMFE: -0.530 GC content %: 48.722 | |
| Atauschii_AET3Gv20278000.4 AET3Gv20278000.4 |
High | No | 612 | OG0009891 | Get ORF Coding potential... Type: noncoding Potential: -1.342 Folding energies... MFEI: -26.340 AMFE: -0.522 GC content %: 50.490 | |
| Atauschii_AET3Gv20278000.5 AET3Gv20278000.5 |
High | No | 590 | OG0003712 | Get ORF Coding potential... Type: noncoding Potential: -1.324 Folding energies... MFEI: -27.881 AMFE: -0.563 GC content %: 49.492 | |
| Atauschii_AET3Gv20278000.6 AET3Gv20278000.6 |
High | No | 935 | OG0003712 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -24.439 AMFE: -0.511 GC content %: 47.807 | |
| Atauschii_AET3Gv20278000.7 AET3Gv20278000.7 |
High | No | 841 | OG0072327 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -22.497 AMFE: -0.523 GC content %: 43.044 | |
| Atauschii_AET3Gv20278000.8 AET3Gv20278000.8 |
High | No | 552 | OG0024954 | Get ORF Coding potential... Type: noncoding Potential: -0.828 Folding energies... MFEI: -24.620 AMFE: -0.509 GC content %: 48.370 | |
| Atauschii_AET3Gv20278000.9 AET3Gv20278000.9 |
High | No | 592 | OG0003712 | Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -25.203 AMFE: -0.617 GC content %: 40.878 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
