Atauschii AET3Gv20286900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20286900 [ AET3Gv20286900] |
3D | 93631235 | 93636175 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20286900.1 AET3Gv20286900.1 |
High | No | 2099 | OG0002888 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -28.657 AMFE: -0.627 GC content %: 45.736 | |
| Atauschii_AET3Gv20286900.10 AET3Gv20286900.10 |
Low | No | 1385 | OG0002888 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -27.487 AMFE: -0.629 GC content %: 43.682 | |
| Atauschii_AET3Gv20286900.11 AET3Gv20286900.11 |
High | No | 1415 | OG0002888 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -27.979 AMFE: -0.635 GC content %: 44.028 | |
| Atauschii_AET3Gv20286900.12 AET3Gv20286900.12 |
Low | No | 1280 | OG0002888 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -28.195 AMFE: -0.633 GC content %: 44.531 | |
| Atauschii_AET3Gv20286900.13 AET3Gv20286900.13 |
High | No | 1841 | OG0002888 | Get ORF Coding potential... Type: noncoding Potential: -1.133 Folding energies... MFEI: -25.937 AMFE: -0.627 GC content %: 41.336 | |
| Atauschii_AET3Gv20286900.14 AET3Gv20286900.14 |
Low | No | 1044 | OG0002888 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -24.550 AMFE: -0.586 GC content %: 41.858 | |
| Atauschii_AET3Gv20286900.19 AET3Gv20286900.19 |
High | No | 588 | OG0002888 | Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -23.384 AMFE: -0.539 GC content %: 43.367 | |
| Atauschii_AET3Gv20286900.8 AET3Gv20286900.8 |
Low | No | 1615 | OG0002888 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -28.080 AMFE: -0.634 GC content %: 44.272 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20286900.12 | SwissProt | 2021-04-01 | F4JY12 | 2.83e-7 |
| Atauschii_AET3Gv20286900.14 | SwissProt | 2021-04-01 | F4JY12 | 2.81e-7 |
| Atauschii_AET3Gv20286900.8 | SwissProt | 2021-04-01 | F4JY12 | 3.75e-7 |
| Atauschii_AET3Gv20286900.10 | SwissProt | 2021-04-01 | F4JY12 | 1.41e-6 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
