GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20309500 [ AET3Gv20309500]	3D	109269951	109274987	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20309500.10 AET3Gv20309500.10	High	No	868	OG0009896		Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -24.401 AMFE: -0.587 GC content %: 41.590
Atauschii_AET3Gv20309500.8 AET3Gv20309500.8	High	No	959	OG0009896		Get ORF Coding potential... Type: noncoding Potential: -0.939 Folding energies... MFEI: -28.300 AMFE: -0.586 GC content %: 48.279
Atauschii_AET3Gv20309500.9 AET3Gv20309500.9	High	No	969	OG0009896		Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -27.668 AMFE: -0.634 GC content %: 43.653

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).