GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20310500 [ AET3Gv20310500]	3D	109864043	109872938	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20310500.21 AET3Gv20310500.21	High	No	404	OG0016166		Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -22.277 AMFE: -0.559 GC content %: 39.851
Atauschii_AET3Gv20310500.22 AET3Gv20310500.22	High	No	348	OG0016166		Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -25.230 AMFE: -0.623 GC content %: 40.517
Atauschii_AET3Gv20310500.23 AET3Gv20310500.23	High	No	715	OG0016166		Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -23.622 AMFE: -0.626 GC content %: 37.762

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).