GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20312300 [ AET3Gv20312300]	3D	111077915	111082281	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20312300.19 AET3Gv20312300.19	High	No	716	OG0024965		Get ORF Coding potential... Type: noncoding Potential: -0.270 Folding energies... MFEI: -25.908 AMFE: -0.610 GC content %: 42.458
Atauschii_AET3Gv20312300.20 AET3Gv20312300.20	High	No	731	OG0024965		Get ORF Coding potential... Type: noncoding Potential: -0.224 Folding energies... MFEI: -25.828 AMFE: -0.615 GC content %: 41.997
Atauschii_AET3Gv20312300.21 AET3Gv20312300.21	High	No	678	OG0072390		Get ORF Coding potential... Type: noncoding Potential: -0.449 Folding energies... MFEI: -25.885 AMFE: -0.611 GC content %: 42.330
Atauschii_AET3Gv20312300.22 AET3Gv20312300.22	High	No	507	OG0072391		Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -24.753 AMFE: -0.621 GC content %: 39.842

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).