Atauschii AET3Gv20324700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20324700 [ AET3Gv20324700] |
3D | 118789237 | 118796218 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20324700.11 AET3Gv20324700.11 |
Low | No | 899 | OG0006881 | Get ORF Coding potential... Type: noncoding Potential: -0.214 Folding energies... MFEI: -27.375 AMFE: -0.568 GC content %: 48.165 | |
| Atauschii_AET3Gv20324700.12 AET3Gv20324700.12 |
Low | No | 251 | OG0072413 | Get ORF Coding potential... Type: noncoding Potential: -0.273 Folding energies... MFEI: -22.629 AMFE: -0.507 GC content %: 44.622 | |
| Atauschii_AET3Gv20324700.13 AET3Gv20324700.13 |
Low | No | 680 | OG0006881 | Get ORF Coding potential... Type: noncoding Potential: -0.181 Folding energies... MFEI: -24.868 AMFE: -0.564 GC content %: 44.118 | |
| Atauschii_AET3Gv20324700.14 AET3Gv20324700.14 |
High | No | 268 | OG0006881 | Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -22.239 AMFE: -0.552 GC content %: 40.299 | |
| Atauschii_AET3Gv20324700.15 AET3Gv20324700.15 |
Low | No | 947 | OG0006881 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -23.706 AMFE: -0.591 GC content %: 40.127 | |
| Atauschii_AET3Gv20324700.21 AET3Gv20324700.21 |
High | No | 397 | OG0072414 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -28.060 AMFE: -0.586 GC content %: 47.859 | |
| Atauschii_AET3Gv20324700.4 AET3Gv20324700.4 |
High | No | 723 | OG0006881 | Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -27.593 AMFE: -0.547 GC content %: 50.484 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20324700.12 | SwissProt | 2021-04-01 | Q8VD57 | 3.39e-11 |
| Atauschii_AET3Gv20324700.13 | SwissProt | 2021-04-01 | O95562 | 1.94e-12 |
| Atauschii_AET3Gv20324700.15 | SwissProt | 2021-04-01 | O95562 | 4.65e-10 |
| Atauschii_AET3Gv20324700.11 | SwissProt | 2021-04-01 | Q5U3Y5 | 2.98e-12 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
