Atauschii AET3Gv20349900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20349900 [ AET3Gv20349900] |
3D | 135166966 | 135171188 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20349900.10 AET3Gv20349900.10 |
High | No | 842 | OG0001890 | Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -31.378 AMFE: -0.622 GC content %: 50.475 | |
| Atauschii_AET3Gv20349900.11 AET3Gv20349900.11 |
High | No | 895 | OG0001890 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -31.330 AMFE: -0.636 GC content %: 49.274 | |
| Atauschii_AET3Gv20349900.12 AET3Gv20349900.12 |
High | No | 1451 | OG0001890 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -27.802 AMFE: -0.629 GC content %: 44.176 | |
| Atauschii_AET3Gv20349900.13 AET3Gv20349900.13 |
High | No | 1195 | OG0001890 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -29.590 AMFE: -0.631 GC content %: 46.862 | |
| Atauschii_AET3Gv20349900.14 AET3Gv20349900.14 |
High | No | 1364 | OG0001890 | Get ORF Coding potential... Type: noncoding Potential: -1.021 Folding energies... MFEI: -29.545 AMFE: -0.647 GC content %: 45.674 | |
| Atauschii_AET3Gv20349900.15 AET3Gv20349900.15 |
High | No | 1133 | OG0001890 | Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -28.244 AMFE: -0.617 GC content %: 45.808 | |
| Atauschii_AET3Gv20349900.16 AET3Gv20349900.16 |
High | No | 994 | OG0001890 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -29.718 AMFE: -0.615 GC content %: 48.290 | |
| Atauschii_AET3Gv20349900.17 AET3Gv20349900.17 |
High | No | 1280 | OG0001890 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -26.695 AMFE: -0.613 GC content %: 43.516 | |
| Atauschii_AET3Gv20349900.8 AET3Gv20349900.8 |
High | No | 1288 | OG0001890 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -27.865 AMFE: -0.624 GC content %: 44.643 | |
| Atauschii_AET3Gv20349900.9 AET3Gv20349900.9 |
High | No | 953 | OG0001890 | Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -31.637 AMFE: -0.640 GC content %: 49.423 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
