Atauschii AET3Gv20364300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20364300 [ AET3Gv20364300] |
3D | 143713353 | 143719077 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20364300.1 AET3Gv20364300.1 |
High | No | 931 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -32.385 AMFE: -0.607 GC content %: 53.383 | |
| Atauschii_AET3Gv20364300.10 AET3Gv20364300.10 |
Low | No | 2283 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -31.051 AMFE: -0.635 GC content %: 48.927 | |
| Atauschii_AET3Gv20364300.12 AET3Gv20364300.12 |
High | No | 666 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -32.763 AMFE: -0.596 GC content %: 54.955 | |
| Atauschii_AET3Gv20364300.14 AET3Gv20364300.14 |
High | No | 3074 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -26.360 AMFE: -0.634 GC content %: 41.574 | |
| Atauschii_AET3Gv20364300.16 AET3Gv20364300.16 |
High | No | 1451 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -24.473 AMFE: -0.565 GC content %: 43.280 | |
| Atauschii_AET3Gv20364300.17 AET3Gv20364300.17 |
High | No | 3828 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.214 Folding energies... MFEI: -25.697 AMFE: -0.623 GC content %: 41.223 | |
| Atauschii_AET3Gv20364300.18 AET3Gv20364300.18 |
High | No | 3959 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -25.698 AMFE: -0.630 GC content %: 40.818 | |
| Atauschii_AET3Gv20364300.19 AET3Gv20364300.19 |
Low | No | 3508 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -27.768 AMFE: -0.635 GC content %: 43.729 | |
| Atauschii_AET3Gv20364300.20 AET3Gv20364300.20 |
High | No | 2503 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -25.106 AMFE: -0.644 GC content %: 38.993 | |
| Atauschii_AET3Gv20364300.21 AET3Gv20364300.21 |
High | No | 1088 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.319 Folding energies... MFEI: -21.930 AMFE: -0.563 GC content %: 38.971 | |
| Atauschii_AET3Gv20364300.22 AET3Gv20364300.22 |
High | No | 2730 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -24.601 AMFE: -0.629 GC content %: 39.084 | |
| Atauschii_AET3Gv20364300.23 AET3Gv20364300.23 |
High | No | 616 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -21.883 AMFE: -0.518 GC content %: 42.208 | |
| Atauschii_AET3Gv20364300.24 AET3Gv20364300.24 |
High | No | 1008 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.296 Folding energies... MFEI: -21.141 AMFE: -0.587 GC content %: 36.012 | |
| Atauschii_AET3Gv20364300.25 AET3Gv20364300.25 |
High | No | 940 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.295 Folding energies... MFEI: -24.532 AMFE: -0.584 GC content %: 42.021 | |
| Atauschii_AET3Gv20364300.26 AET3Gv20364300.26 |
High | No | 1325 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.348 Folding energies... MFEI: -23.698 AMFE: -0.583 GC content %: 40.679 | |
| Atauschii_AET3Gv20364300.28 AET3Gv20364300.28 |
High | No | 1921 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.150 Folding energies... MFEI: -25.190 AMFE: -0.628 GC content %: 40.135 | |
| Atauschii_AET3Gv20364300.3 AET3Gv20364300.3 |
Low | No | 2470 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -30.680 AMFE: -0.626 GC content %: 49.028 | |
| Atauschii_AET3Gv20364300.30 AET3Gv20364300.30 |
High | No | 2024 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -25.173 AMFE: -0.634 GC content %: 39.723 | |
| Atauschii_AET3Gv20364300.4 AET3Gv20364300.4 |
High | No | 2167 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -27.563 AMFE: -0.596 GC content %: 46.239 | |
| Atauschii_AET3Gv20364300.6 AET3Gv20364300.6 |
High | No | 3510 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -26.769 AMFE: -0.623 GC content %: 42.991 | |
| Atauschii_AET3Gv20364300.7 AET3Gv20364300.7 |
High | No | 1090 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -32.257 AMFE: -0.613 GC content %: 52.661 | |
| Atauschii_AET3Gv20364300.9 AET3Gv20364300.9 |
Low | No | 4095 | OG0000396 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -28.847 AMFE: -0.641 GC content %: 44.982 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20364300.9 | SwissProt | 2021-04-01 | Q658G7 | 6.12e-7 |
| Atauschii_AET3Gv20364300.10 | SwissProt | 2021-04-01 | Q658G7 | 2.86e-7 |
| Atauschii_AET3Gv20364300.19 | SwissProt | 2021-04-01 | Q658G7 | 5.07e-7 |
| Atauschii_AET3Gv20364300.3 | SwissProt | 2021-04-01 | Q658G7 | 3.19e-7 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
