Atauschii AET3Gv20366700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20366700 [ AET3Gv20366700] |
3D | 144045625 | 144049905 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20366700.1 AET3Gv20366700.1 |
Low | No | 1246 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.274 Folding energies... MFEI: -32.368 AMFE: -0.670 GC content %: 48.315 | |
| Atauschii_AET3Gv20366700.10 AET3Gv20366700.10 |
Low | No | 1306 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.350 Folding energies... MFEI: -32.029 AMFE: -0.669 GC content %: 47.856 | |
| Atauschii_AET3Gv20366700.11 AET3Gv20366700.11 |
Low | No | 1957 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.325 Folding energies... MFEI: -31.226 AMFE: -0.705 GC content %: 44.303 | |
| Atauschii_AET3Gv20366700.12 AET3Gv20366700.12 |
Low | No | 2115 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.406 Folding energies... MFEI: -30.142 AMFE: -0.701 GC content %: 42.979 | |
| Atauschii_AET3Gv20366700.13 AET3Gv20366700.13 |
Low | No | 1051 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.248 Folding energies... MFEI: -33.568 AMFE: -0.662 GC content %: 50.714 | |
| Atauschii_AET3Gv20366700.14 AET3Gv20366700.14 |
Low | No | 2361 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.344 Folding energies... MFEI: -30.263 AMFE: -0.704 GC content %: 42.990 | |
| Atauschii_AET3Gv20366700.15 AET3Gv20366700.15 |
Low | No | 2524 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.361 Folding energies... MFEI: -29.556 AMFE: -0.697 GC content %: 42.433 | |
| Atauschii_AET3Gv20366700.16 AET3Gv20366700.16 |
Low | No | 1643 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.358 Folding energies... MFEI: -30.341 AMFE: -0.681 GC content %: 44.553 | |
| Atauschii_AET3Gv20366700.17 AET3Gv20366700.17 |
Low | No | 2357 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.349 Folding energies... MFEI: -29.686 AMFE: -0.701 GC content %: 42.342 | |
| Atauschii_AET3Gv20366700.18 AET3Gv20366700.18 |
Low | No | 1553 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.232 Folding energies... MFEI: -30.077 AMFE: -0.682 GC content %: 44.108 | |
| Atauschii_AET3Gv20366700.19 AET3Gv20366700.19 |
Low | No | 1756 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.321 Folding energies... MFEI: -31.822 AMFE: -0.703 GC content %: 45.273 | |
| Atauschii_AET3Gv20366700.2 AET3Gv20366700.2 |
Low | No | 1296 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.269 Folding energies... MFEI: -32.276 AMFE: -0.670 GC content %: 48.148 | |
| Atauschii_AET3Gv20366700.20 AET3Gv20366700.20 |
Low | No | 1723 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.314 Folding energies... MFEI: -30.139 AMFE: -0.681 GC content %: 44.225 | |
| Atauschii_AET3Gv20366700.21 AET3Gv20366700.21 |
Low | No | 1080 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.258 Folding energies... MFEI: -28.657 AMFE: -0.674 GC content %: 42.500 | |
| Atauschii_AET3Gv20366700.22 AET3Gv20366700.22 |
Low | No | 2157 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.355 Folding energies... MFEI: -26.083 AMFE: -0.685 GC content %: 38.062 | |
| Atauschii_AET3Gv20366700.23 AET3Gv20366700.23 |
Low | No | 1473 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.310 Folding energies... MFEI: -26.504 AMFE: -0.687 GC content %: 38.561 | |
| Atauschii_AET3Gv20366700.3 AET3Gv20366700.3 |
Low | No | 1804 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.322 Folding energies... MFEI: -31.840 AMFE: -0.706 GC content %: 45.122 | |
| Atauschii_AET3Gv20366700.4 AET3Gv20366700.4 |
Low | No | 2946 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.370 Folding energies... MFEI: -28.690 AMFE: -0.697 GC content %: 41.174 | |
| Atauschii_AET3Gv20366700.5 AET3Gv20366700.5 |
Low | No | 1960 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.334 Folding energies... MFEI: -31.066 AMFE: -0.701 GC content %: 44.286 | |
| Atauschii_AET3Gv20366700.6 AET3Gv20366700.6 |
Low | No | 2856 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.461 Folding energies... MFEI: -28.557 AMFE: -0.694 GC content %: 41.176 | |
| Atauschii_AET3Gv20366700.7 AET3Gv20366700.7 |
Low | No | 1716 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.393 Folding energies... MFEI: -30.705 AMFE: -0.692 GC content %: 44.347 | |
| Atauschii_AET3Gv20366700.8 AET3Gv20366700.8 |
Low | No | 1587 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.302 Folding energies... MFEI: -31.430 AMFE: -0.693 GC content %: 45.369 | |
| Atauschii_AET3Gv20366700.9 AET3Gv20366700.9 |
Low | No | 2279 | OG0000360 | Get ORF Coding potential... Type: noncoding Potential: -0.424 Folding energies... MFEI: -29.614 AMFE: -0.698 GC content %: 42.431 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20366700.19 | SwissProt | 2021-04-01 | A2RVV7 | 2.45e-26 |
| Atauschii_AET3Gv20366700.12 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET3Gv20366700.9 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET3Gv20366700.14 | SwissProt | 2021-04-01 | A2RVV7 | 4.65e-26 |
| Atauschii_AET3Gv20366700.8 | SwissProt | 2021-04-01 | A2RVV7 | 6.45e-27 |
| Atauschii_AET3Gv20366700.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET3Gv20366700.3 | SwissProt | 2021-04-01 | A2RVV7 | 1.21e-25 |
| Atauschii_AET3Gv20366700.19 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET3Gv20366700.1 | SwissProt | 2021-04-01 | A2RVV7 | 8.53e-27 |
| Atauschii_AET3Gv20366700.2 | SwissProt | 2021-04-01 | A2RVV7 | 1.06e-26 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
