Atauschii AET3Gv20370600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20370600 [ AET3Gv20370600] |
3D | 146015253 | 146018620 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20370600.10 AET3Gv20370600.10 |
Low | No | 2096 | OG0002892 | Get ORF Coding potential... Type: noncoding Potential: -0.017 Folding energies... MFEI: -33.053 AMFE: -0.677 GC content %: 48.807 | |
| Atauschii_AET3Gv20370600.12 AET3Gv20370600.12 |
Low | No | 1556 | OG0002892 | Get ORF Coding potential... Type: noncoding Potential: -0.076 Folding energies... MFEI: -34.569 AMFE: -0.648 GC content %: 53.342 | |
| Atauschii_AET3Gv20370600.15 AET3Gv20370600.15 |
Low | No | 1131 | OG0002892 | Get ORF Coding potential... Type: noncoding Potential: -0.170 Folding energies... MFEI: -32.935 AMFE: -0.681 GC content %: 48.364 | |
| Atauschii_AET3Gv20370600.20 AET3Gv20370600.20 |
Low | No | 2146 | OG0002892 | Get ORF Coding potential... Type: noncoding Potential: -0.018 Folding energies... MFEI: -32.651 AMFE: -0.673 GC content %: 48.509 | |
| Atauschii_AET3Gv20370600.26 AET3Gv20370600.26 |
High | No | 1313 | OG0002892 | Get ORF Coding potential... Type: noncoding Potential: -0.713 Folding energies... MFEI: -25.605 AMFE: -0.661 GC content %: 38.766 | |
| Atauschii_AET3Gv20370600.27 AET3Gv20370600.27 |
High | No | 1147 | OG0002892 | Get ORF Coding potential... Type: noncoding Potential: -0.772 Folding energies... MFEI: -26.556 AMFE: -0.659 GC content %: 40.279 | |
| Atauschii_AET3Gv20370600.28 AET3Gv20370600.28 |
High | No | 566 | OG0002892 | Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -24.735 AMFE: -0.553 GC content %: 44.700 | |
| Atauschii_AET3Gv20370600.3 AET3Gv20370600.3 |
Low | No | 1939 | OG0002892 | Get ORF Coding potential... Type: noncoding Potential: -0.086 Folding energies... MFEI: -32.666 AMFE: -0.653 GC content %: 50.026 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20370600.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET3Gv20370600.10 | SwissProt | 2021-04-01 | Q10FF9 | 4.94e-14 |
| Atauschii_AET3Gv20370600.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET3Gv20370600.12 | SwissProt | 2021-04-01 | Q10FF9 | 3.42e-14 |
| Atauschii_AET3Gv20370600.15 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET3Gv20370600.15 | SwissProt | 2021-04-01 | Q10FF9 | 1.93e-14 |
| Atauschii_AET3Gv20370600.20 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET3Gv20370600.20 | SwissProt | 2021-04-01 | Q10FF9 | 5.08e-14 |
| Atauschii_AET3Gv20370600.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET3Gv20370600.3 | SwissProt | 2021-04-01 | Q10FF9 | 2.47e-14 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
