GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20403200 [ AET3Gv20403200]	3D	169452195	169459092	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20403200.13 AET3Gv20403200.13	High	No	246	OG0072567		Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -18.455 AMFE: -0.540 GC content %: 34.146
Atauschii_AET3Gv20403200.15 AET3Gv20403200.15	High	No	241	OG0072568		Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -31.328 AMFE: -0.497 GC content %: 63.071
Atauschii_AET3Gv20403200.8 AET3Gv20403200.8	High	No	653	OG0072569		Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -27.427 AMFE: -0.668 GC content %: 41.041

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).