Atauschii AET3Gv20411600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20411600 [ AET3Gv20411600] |
3D | 174066593 | 174082514 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20411600.10 AET3Gv20411600.10 |
Low | No | 1850 | OG0000772 | Get ORF Coding potential... Type: noncoding Potential: -0.603 Folding energies... MFEI: -30.108 AMFE: -0.654 GC content %: 46.054 | |
| Atauschii_AET3Gv20411600.12 AET3Gv20411600.12 |
Low | No | 1888 | OG0000772 | Get ORF Coding potential... Type: noncoding Potential: -0.605 Folding energies... MFEI: -30.260 AMFE: -0.663 GC content %: 45.657 | |
| Atauschii_AET3Gv20411600.13 AET3Gv20411600.13 |
Low | No | 922 | OG0000772 | Get ORF Coding potential... Type: noncoding Potential: -0.592 Folding energies... MFEI: -30.488 AMFE: -0.611 GC content %: 49.892 | |
| Atauschii_AET3Gv20411600.14 AET3Gv20411600.14 |
Low | No | 1337 | OG0000772 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -30.015 AMFE: -0.676 GC content %: 44.428 | |
| Atauschii_AET3Gv20411600.15 AET3Gv20411600.15 |
Low | No | 2103 | OG0000772 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -27.237 AMFE: -0.672 GC content %: 40.561 | |
| Atauschii_AET3Gv20411600.18 AET3Gv20411600.18 |
Low | Yes | 794 | OG0000772 | Get ORF Coding potential... Type: noncoding Potential: -0.602 Folding energies... MFEI: -26.725 AMFE: -0.691 GC content %: 38.665 | |
| Atauschii_AET3Gv20411600.19 AET3Gv20411600.19 |
Low | No | 904 | OG0000772 | Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -25.697 AMFE: -0.633 GC content %: 40.597 | |
| Atauschii_AET3Gv20411600.2 AET3Gv20411600.2 |
Low | No | 2492 | OG0000772 | Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -28.788 AMFE: -0.665 GC content %: 43.299 | |
| Atauschii_AET3Gv20411600.20 AET3Gv20411600.20 |
Low | No | 905 | OG0000772 | Get ORF Coding potential... Type: noncoding Potential: -0.563 Folding energies... MFEI: -25.901 AMFE: -0.630 GC content %: 41.105 | |
| Atauschii_AET3Gv20411600.4 AET3Gv20411600.4 |
Low | No | 2230 | OG0000772 | Get ORF Coding potential... Type: noncoding Potential: -0.612 Folding energies... MFEI: -30.668 AMFE: -0.656 GC content %: 46.771 | |
| Atauschii_AET3Gv20411600.5 AET3Gv20411600.5 |
Low | No | 2230 | OG0000772 | Get ORF Coding potential... Type: noncoding Potential: -0.642 Folding energies... MFEI: -30.556 AMFE: -0.653 GC content %: 46.771 | |
| Atauschii_AET3Gv20411600.8 AET3Gv20411600.8 |
Low | No | 2685 | OG0000772 | Get ORF Coding potential... Type: noncoding Potential: -0.665 Folding energies... MFEI: -30.678 AMFE: -0.661 GC content %: 46.406 | |
| Atauschii_AET3Gv20411600.9 AET3Gv20411600.9 |
Low | No | 897 | OG0000772 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -30.123 AMFE: -0.604 GC content %: 49.833 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20411600.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Atauschii_AET3Gv20411600.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Atauschii_AET3Gv20411600.4 | SwissProt | 2021-04-01 | Q80XJ3 | 2.78e-7 |
| Atauschii_AET3Gv20411600.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Atauschii_AET3Gv20411600.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Atauschii_AET3Gv20411600.5 | SwissProt | 2021-04-01 | Q80XJ3 | 3.2e-6 |
| Atauschii_AET3Gv20411600.13 | SwissProt | 2021-04-01 | Q80XJ3 | 5.5e-7 |
| Atauschii_AET3Gv20411600.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Atauschii_AET3Gv20411600.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Atauschii_AET3Gv20411600.8 | SwissProt | 2021-04-01 | Q80XJ3 | 4.13e-6 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
