GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20425100 [ AET3Gv20425100]	3D	184358726	184367331	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20425100.23 AET3Gv20425100.23	High	No	768	OG0025002		Get ORF Coding potential... Type: noncoding Potential: -1.059 Folding energies... MFEI: -30.182 AMFE: -0.597 GC content %: 50.521
Atauschii_AET3Gv20425100.32 AET3Gv20425100.32	High	No	513	OG0072625		Get ORF Coding potential... Type: noncoding Potential: -0.511 Folding energies... MFEI: -30.955 AMFE: -0.613 GC content %: 50.487
Atauschii_AET3Gv20425100.5 AET3Gv20425100.5	High	No	640	OG0072626		Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -36.891 AMFE: -0.650 GC content %: 56.719

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).