Atauschii AET3Gv20446100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20446100 [ AET3Gv20446100] |
3D | 212991258 | 212996523 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20446100.1 AET3Gv20446100.1 |
Low | No | 1331 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.109 Folding energies... MFEI: -30.563 AMFE: -0.593 GC content %: 51.540 | |
| Atauschii_AET3Gv20446100.10 AET3Gv20446100.10 |
Low | No | 1734 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.297 Folding energies... MFEI: -28.639 AMFE: -0.603 GC content %: 47.463 | |
| Atauschii_AET3Gv20446100.11 AET3Gv20446100.11 |
Low | No | 1258 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.214 Folding energies... MFEI: -30.556 AMFE: -0.584 GC content %: 52.305 | |
| Atauschii_AET3Gv20446100.12 AET3Gv20446100.12 |
Low | No | 2035 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.320 Folding energies... MFEI: -27.725 AMFE: -0.604 GC content %: 45.897 | |
| Atauschii_AET3Gv20446100.13 AET3Gv20446100.13 |
Low | No | 2517 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.412 Folding energies... MFEI: -26.579 AMFE: -0.609 GC content %: 43.623 | |
| Atauschii_AET3Gv20446100.14 AET3Gv20446100.14 |
Low | No | 2516 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.411 Folding energies... MFEI: -26.475 AMFE: -0.608 GC content %: 43.521 | |
| Atauschii_AET3Gv20446100.15 AET3Gv20446100.15 |
Low | No | 2575 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.414 Folding energies... MFEI: -26.280 AMFE: -0.607 GC content %: 43.301 | |
| Atauschii_AET3Gv20446100.16 AET3Gv20446100.16 |
Low | No | 1654 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.282 Folding energies... MFEI: -28.839 AMFE: -0.595 GC content %: 48.489 | |
| Atauschii_AET3Gv20446100.17 AET3Gv20446100.17 |
Low | No | 1684 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.284 Folding energies... MFEI: -28.088 AMFE: -0.592 GC content %: 47.447 | |
| Atauschii_AET3Gv20446100.18 AET3Gv20446100.18 |
Low | No | 1594 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.278 Folding energies... MFEI: -28.877 AMFE: -0.592 GC content %: 48.745 | |
| Atauschii_AET3Gv20446100.19 AET3Gv20446100.19 |
Low | No | 998 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.189 Folding energies... MFEI: -31.573 AMFE: -0.554 GC content %: 57.014 | |
| Atauschii_AET3Gv20446100.2 AET3Gv20446100.2 |
Low | No | 1311 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.097 Folding energies... MFEI: -30.717 AMFE: -0.594 GC content %: 51.716 | |
| Atauschii_AET3Gv20446100.20 AET3Gv20446100.20 |
Low | No | 1037 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.056 Folding energies... MFEI: -31.832 AMFE: -0.560 GC content %: 56.798 | |
| Atauschii_AET3Gv20446100.21 AET3Gv20446100.21 |
Low | No | 970 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.046 Folding energies... MFEI: -32.320 AMFE: -0.556 GC content %: 58.144 | |
| Atauschii_AET3Gv20446100.22 AET3Gv20446100.22 |
Low | No | 1785 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.300 Folding energies... MFEI: -27.697 AMFE: -0.596 GC content %: 46.443 | |
| Atauschii_AET3Gv20446100.23 AET3Gv20446100.23 |
Low | No | 1307 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.096 Folding energies... MFEI: -30.084 AMFE: -0.590 GC content %: 51.033 | |
| Atauschii_AET3Gv20446100.24 AET3Gv20446100.24 |
Low | No | 1758 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.299 Folding energies... MFEI: -27.838 AMFE: -0.598 GC content %: 46.587 | |
| Atauschii_AET3Gv20446100.25 AET3Gv20446100.25 |
Low | No | 1296 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.095 Folding energies... MFEI: -30.062 AMFE: -0.588 GC content %: 51.157 | |
| Atauschii_AET3Gv20446100.26 AET3Gv20446100.26 |
Low | No | 877 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -25.302 AMFE: -0.683 GC content %: 37.058 | |
| Atauschii_AET3Gv20446100.27 AET3Gv20446100.27 |
Low | No | 2377 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.524 Folding energies... MFEI: -25.629 AMFE: -0.592 GC content %: 43.290 | |
| Atauschii_AET3Gv20446100.28 AET3Gv20446100.28 |
Low | No | 799 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.151 Folding energies... MFEI: -31.652 AMFE: -0.536 GC content %: 59.074 | |
| Atauschii_AET3Gv20446100.3 AET3Gv20446100.3 |
Low | No | 1277 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.234 Folding energies... MFEI: -29.687 AMFE: -0.575 GC content %: 51.605 | |
| Atauschii_AET3Gv20446100.4 AET3Gv20446100.4 |
Low | No | 1308 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -1.109 Folding energies... MFEI: -24.029 AMFE: -0.673 GC content %: 35.703 | |
| Atauschii_AET3Gv20446100.5 AET3Gv20446100.5 |
Low | No | 1806 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.302 Folding energies... MFEI: -28.056 AMFE: -0.601 GC content %: 46.678 | |
| Atauschii_AET3Gv20446100.6 AET3Gv20446100.6 |
Low | No | 566 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -25.972 AMFE: -0.639 GC content %: 40.636 | |
| Atauschii_AET3Gv20446100.8 AET3Gv20446100.8 |
Low | No | 1340 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.100 Folding energies... MFEI: -30.396 AMFE: -0.591 GC content %: 51.418 | |
| Atauschii_AET3Gv20446100.9 AET3Gv20446100.9 |
Low | No | 1258 | OG0000240 | Get ORF Coding potential... Type: noncoding Potential: -0.091 Folding energies... MFEI: -31.002 AMFE: -0.588 GC content %: 52.703 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20446100.28 | SwissProt | 2021-04-01 | P22988 | 3.14e-12 |
| Atauschii_AET3Gv20446100.12 | SwissProt | 2021-04-01 | P22988 | 7.75e-12 |
| Atauschii_AET3Gv20446100.22 | SwissProt | 2021-04-01 | P22988 | 1.62e-11 |
| Atauschii_AET3Gv20446100.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-Transib | |
| Atauschii_AET3Gv20446100.9 | SwissProt | 2021-04-01 | P22988 | 1.22e-11 |
| Atauschii_AET3Gv20446100.18 | SwissProt | 2021-04-01 | P22988 | 1.41e-11 |
| Atauschii_AET3Gv20446100.3 | SwissProt | 2021-04-01 | P22988 | 5.84e-12 |
| Atauschii_AET3Gv20446100.13 | SwissProt | 2021-04-01 | P22988 | 9.84e-12 |
| Atauschii_AET3Gv20446100.23 | SwissProt | 2021-04-01 | P22988 | 1.46e-11 |
| Atauschii_AET3Gv20446100.15 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-Transib |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
