Atauschii AET3Gv20455100
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20455100 [ AET3Gv20455100] |
3D | 223764534 | 223766564 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20455100.10 AET3Gv20455100.10 |
Low | No | 1430 | OG0000993 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -29.105 AMFE: -0.580 GC content %: 50.210 | |
| Atauschii_AET3Gv20455100.11 AET3Gv20455100.11 |
High | No | 1269 | OG0000993 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -29.787 AMFE: -0.581 GC content %: 51.300 | |
| Atauschii_AET3Gv20455100.12 AET3Gv20455100.12 |
High | No | 1362 | OG0000993 | Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -30.683 AMFE: -0.608 GC content %: 50.441 | |
| Atauschii_AET3Gv20455100.13 AET3Gv20455100.13 |
High | No | 1214 | OG0000993 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -31.433 AMFE: -0.612 GC content %: 51.400 | |
| Atauschii_AET3Gv20455100.14 AET3Gv20455100.14 |
High | No | 1468 | OG0000993 | Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -29.285 AMFE: -0.589 GC content %: 49.728 | |
| Atauschii_AET3Gv20455100.15 AET3Gv20455100.15 |
High | No | 685 | OG0000993 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -31.358 AMFE: -0.542 GC content %: 57.810 | |
| Atauschii_AET3Gv20455100.2 AET3Gv20455100.2 |
High | No | 1553 | OG0000993 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -29.491 AMFE: -0.587 GC content %: 50.225 | |
| Atauschii_AET3Gv20455100.3 AET3Gv20455100.3 |
Low | No | 1626 | OG0000993 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -29.311 AMFE: -0.599 GC content %: 48.954 | |
| Atauschii_AET3Gv20455100.4 AET3Gv20455100.4 |
Low | No | 1683 | OG0000993 | Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -28.758 AMFE: -0.588 GC content %: 48.901 | |
| Atauschii_AET3Gv20455100.5 AET3Gv20455100.5 |
High | No | 1583 | OG0000993 | Get ORF Coding potential... Type: noncoding Potential: -1.092 Folding energies... MFEI: -29.735 AMFE: -0.608 GC content %: 48.895 | |
| Atauschii_AET3Gv20455100.6 AET3Gv20455100.6 |
Low | No | 1416 | OG0000993 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -29.979 AMFE: -0.591 GC content %: 50.706 | |
| Atauschii_AET3Gv20455100.7 AET3Gv20455100.7 |
High | No | 1616 | OG0000993 | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -29.313 AMFE: -0.600 GC content %: 48.824 | |
| Atauschii_AET3Gv20455100.8 AET3Gv20455100.8 |
High | No | 1540 | OG0000993 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -30.195 AMFE: -0.618 GC content %: 48.831 | |
| Atauschii_AET3Gv20455100.9 AET3Gv20455100.9 |
Low | No | 1479 | OG0000993 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -29.087 AMFE: -0.588 GC content %: 49.493 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20455100.4 | SwissProt | 2021-04-01 | Q9XFH4 | 9.71e-6 |
| Atauschii_AET3Gv20455100.6 | SwissProt | 2021-04-01 | Q9XFH4 | 3.5e-4 |
| Atauschii_AET3Gv20455100.9 | SwissProt | 2021-04-01 | Q9XFH4 | 7.85e-6 |
| Atauschii_AET3Gv20455100.10 | SwissProt | 2021-04-01 | Q9XFH4 | 7.05e-4 |
| Atauschii_AET3Gv20455100.3 | SwissProt | 2021-04-01 | Q9XFH4 | 8.58e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
