Atauschii AET3Gv20460100
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20460100 [ AET3Gv20460100] |
3D | 228563940 | 228567231 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20460100.1 AET3Gv20460100.1 |
Low | No | 1738 | OG0001557 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -32.198 AMFE: -0.661 GC content %: 48.677 | |
| Atauschii_AET3Gv20460100.10 AET3Gv20460100.10 |
Low | No | 1182 | OG0001557 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -29.729 AMFE: -0.647 GC content %: 45.939 | |
| Atauschii_AET3Gv20460100.2 AET3Gv20460100.2 |
Low | No | 1554 | OG0001557 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -32.876 AMFE: -0.665 GC content %: 49.421 | |
| Atauschii_AET3Gv20460100.3 AET3Gv20460100.3 |
Low | No | 2012 | OG0001557 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -30.840 AMFE: -0.669 GC content %: 46.123 | |
| Atauschii_AET3Gv20460100.4 AET3Gv20460100.4 |
Low | No | 1908 | OG0001557 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -30.765 AMFE: -0.671 GC content %: 45.860 | |
| Atauschii_AET3Gv20460100.5 AET3Gv20460100.5 |
Low | No | 1866 | OG0001557 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -31.699 AMFE: -0.659 GC content %: 48.124 | |
| Atauschii_AET3Gv20460100.6 AET3Gv20460100.6 |
Low | No | 1713 | OG0001557 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -32.218 AMFE: -0.667 GC content %: 48.336 | |
| Atauschii_AET3Gv20460100.7 AET3Gv20460100.7 |
Low | No | 1551 | OG0001557 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -33.166 AMFE: -0.658 GC content %: 50.419 | |
| Atauschii_AET3Gv20460100.8 AET3Gv20460100.8 |
Low | No | 1099 | OG0001557 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -32.384 AMFE: -0.640 GC content %: 50.591 | |
| Atauschii_AET3Gv20460100.9 AET3Gv20460100.9 |
Low | No | 1428 | OG0001557 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -28.382 AMFE: -0.641 GC content %: 44.258 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20460100.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET3Gv20460100.5 | SwissProt | 2021-04-01 | Q9ZVC9 | 8.08e-9 |
| Atauschii_AET3Gv20460100.1 | SwissProt | 2021-04-01 | Q9ZVC9 | 7.47e-9 |
| Atauschii_AET3Gv20460100.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET3Gv20460100.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET3Gv20460100.6 | SwissProt | 2021-04-01 | Q9ZVC9 | 7.32e-9 |
| Atauschii_AET3Gv20460100.10 | SwissProt | 2021-04-01 | Q9ZVC9 | 4.59e-9 |
| Atauschii_AET3Gv20460100.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET3Gv20460100.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET3Gv20460100.7 | SwissProt | 2021-04-01 | Q9ZVC9 | 3.36e-7 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
