Atauschii AET3Gv20484600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20484600 [ AET3Gv20484600] |
3D | 261005833 | 261014162 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20484600.14 AET3Gv20484600.14 |
Low | No | 1215 | OG0000994 | Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -28.115 AMFE: -0.584 GC content %: 48.148 | |
| Atauschii_AET3Gv20484600.16 AET3Gv20484600.16 |
Low | No | 4147 | OG0000994 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -31.623 AMFE: -0.669 GC content %: 47.263 | |
| Atauschii_AET3Gv20484600.17 AET3Gv20484600.17 |
Low | No | 4287 | OG0000994 | Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -31.504 AMFE: -0.666 GC content %: 47.282 | |
| Atauschii_AET3Gv20484600.19 AET3Gv20484600.19 |
Low | No | 2950 | OG0000994 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -30.437 AMFE: -0.628 GC content %: 48.475 | |
| Atauschii_AET3Gv20484600.2 AET3Gv20484600.2 |
Low | No | 5624 | OG0000994 | Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -30.428 AMFE: -0.643 GC content %: 47.333 | |
| Atauschii_AET3Gv20484600.20 AET3Gv20484600.20 |
Low | No | 3069 | OG0000994 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -29.951 AMFE: -0.620 GC content %: 48.289 | |
| Atauschii_AET3Gv20484600.21 AET3Gv20484600.21 |
Low | No | 4802 | OG0000994 | Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -31.278 AMFE: -0.650 GC content %: 48.147 | |
| Atauschii_AET3Gv20484600.22 AET3Gv20484600.22 |
Low | No | 3002 | OG0000994 | Get ORF Coding potential... Type: noncoding Potential: -1.011 Folding energies... MFEI: -29.400 AMFE: -0.597 GC content %: 49.234 | |
| Atauschii_AET3Gv20484600.26 AET3Gv20484600.26 |
Low | No | 4454 | OG0000994 | Get ORF Coding potential... Type: noncoding Potential: -0.914 Folding energies... MFEI: -31.973 AMFE: -0.663 GC content %: 48.249 | |
| Atauschii_AET3Gv20484600.3 AET3Gv20484600.3 |
Low | No | 3525 | OG0000994 | Get ORF Coding potential... Type: noncoding Potential: -1.222 Folding energies... MFEI: -29.007 AMFE: -0.625 GC content %: 46.440 | |
| Atauschii_AET3Gv20484600.30 AET3Gv20484600.30 |
Low | No | 4690 | OG0000994 | Get ORF Coding potential... Type: noncoding Potential: -0.917 Folding energies... MFEI: -31.311 AMFE: -0.647 GC content %: 48.358 | |
| Atauschii_AET3Gv20484600.4 AET3Gv20484600.4 |
Low | No | 2798 | OG0000994 | Get ORF Coding potential... Type: noncoding Potential: -1.150 Folding energies... MFEI: -28.435 AMFE: -0.634 GC content %: 44.818 | |
| Atauschii_AET3Gv20484600.5 AET3Gv20484600.5 |
Low | No | 3212 | OG0000994 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -29.857 AMFE: -0.631 GC content %: 47.291 | |
| Atauschii_AET3Gv20484600.8 AET3Gv20484600.8 |
High | No | 738 | OG0000994 | Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -23.848 AMFE: -0.585 GC content %: 40.786 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20484600.16 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LTR/Gypsy | |
| Atauschii_AET3Gv20484600.3 | SwissProt | 2021-04-01 | Q9M1S3 | 9.05e-8 |
| Atauschii_AET3Gv20484600.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LTR/Gypsy | |
| Atauschii_AET3Gv20484600.2 | SwissProt | 2021-04-01 | Q9M1S3 | 9.02e-5 |
| Atauschii_AET3Gv20484600.22 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET3Gv20484600.17 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LTR/Gypsy | |
| Atauschii_AET3Gv20484600.30 | SwissProt | 2021-04-01 | Q9M1S3 | 4.83e-8 |
| Atauschii_AET3Gv20484600.20 | SwissProt | 2021-04-01 | Q9M1S3 | 3.29e-7 |
| Atauschii_AET3Gv20484600.26 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LTR/Gypsy | |
| Atauschii_AET3Gv20484600.14 | SwissProt | 2021-04-01 | Q9M1S3 | 6.71e-9 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
