Atauschii AET3Gv20490200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20490200 [ AET3Gv20490200] |
3D | 265801460 | 265811016 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20490200.12 AET3Gv20490200.12 |
High | No | 3489 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -30.072 AMFE: -0.663 GC content %: 45.371 | |
| Atauschii_AET3Gv20490200.13 AET3Gv20490200.13 |
High | No | 2978 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -31.111 AMFE: -0.667 GC content %: 46.642 | |
| Atauschii_AET3Gv20490200.15 AET3Gv20490200.15 |
High | No | 3522 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.027 Folding energies... MFEI: -30.261 AMFE: -0.666 GC content %: 45.429 | |
| Atauschii_AET3Gv20490200.17 AET3Gv20490200.17 |
High | No | 2333 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -33.228 AMFE: -0.664 GC content %: 50.021 | |
| Atauschii_AET3Gv20490200.18 AET3Gv20490200.18 |
High | No | 2854 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -31.405 AMFE: -0.672 GC content %: 46.741 | |
| Atauschii_AET3Gv20490200.19 AET3Gv20490200.19 |
High | No | 2314 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -33.436 AMFE: -0.665 GC content %: 50.259 | |
| Atauschii_AET3Gv20490200.20 AET3Gv20490200.20 |
High | No | 2337 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -33.205 AMFE: -0.664 GC content %: 49.979 | |
| Atauschii_AET3Gv20490200.25 AET3Gv20490200.25 |
High | No | 263 | OG0072719 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -23.156 AMFE: -0.487 GC content %: 47.529 | |
| Atauschii_AET3Gv20490200.28 AET3Gv20490200.28 |
Low | No | 616 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -28.523 AMFE: -0.625 GC content %: 45.617 | |
| Atauschii_AET3Gv20490200.29 AET3Gv20490200.29 |
High | No | 1370 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -25.745 AMFE: -0.638 GC content %: 40.365 | |
| Atauschii_AET3Gv20490200.30 AET3Gv20490200.30 |
High | No | 2476 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -24.632 AMFE: -0.645 GC content %: 38.166 | |
| Atauschii_AET3Gv20490200.31 AET3Gv20490200.31 |
High | No | 1276 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -24.734 AMFE: -0.619 GC content %: 39.969 | |
| Atauschii_AET3Gv20490200.4 AET3Gv20490200.4 |
High | No | 804 | OG0072720 | Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -34.639 AMFE: -0.593 GC content %: 58.458 | |
| Atauschii_AET3Gv20490200.5 AET3Gv20490200.5 |
High | No | 2295 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -33.011 AMFE: -0.660 GC content %: 50.022 | |
| Atauschii_AET3Gv20490200.6 AET3Gv20490200.6 |
High | No | 2410 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -32.846 AMFE: -0.658 GC content %: 49.917 | |
| Atauschii_AET3Gv20490200.8 AET3Gv20490200.8 |
High | No | 2423 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -33.256 AMFE: -0.664 GC content %: 50.062 | |
| Atauschii_AET3Gv20490200.9 AET3Gv20490200.9 |
High | No | 3535 | OG0000075 | Get ORF Coding potential... Type: noncoding Potential: -1.027 Folding energies... MFEI: -30.249 AMFE: -0.665 GC content %: 45.460 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20490200.28 | SwissProt | 2021-04-01 | Q6AVI0 | 8.45e-4 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
