Atauschii AET3Gv20506500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20506500 [ AET3Gv20506500] |
3D | 283157789 | 283164365 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20506500.1 AET3Gv20506500.1 |
High | No | 980 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -28.663 AMFE: -0.574 GC content %: 49.898 | |
| Atauschii_AET3Gv20506500.10 AET3Gv20506500.10 |
High | No | 1391 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -25.701 AMFE: -0.579 GC content %: 44.357 | |
| Atauschii_AET3Gv20506500.11 AET3Gv20506500.11 |
High | No | 1507 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -19.582 AMFE: -0.520 GC content %: 37.624 | |
| Atauschii_AET3Gv20506500.12 AET3Gv20506500.12 |
High | No | 1557 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -19.544 AMFE: -0.513 GC content %: 38.086 | |
| Atauschii_AET3Gv20506500.13 AET3Gv20506500.13 |
High | No | 1328 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -18.938 AMFE: -0.483 GC content %: 39.232 | |
| Atauschii_AET3Gv20506500.14 AET3Gv20506500.14 |
High | No | 1900 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -23.211 AMFE: -0.571 GC content %: 40.684 | |
| Atauschii_AET3Gv20506500.15 AET3Gv20506500.15 |
High | No | 1497 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -19.506 AMFE: -0.524 GC content %: 37.208 | |
| Atauschii_AET3Gv20506500.16 AET3Gv20506500.16 |
High | No | 1992 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.290 Folding energies... MFEI: -23.193 AMFE: -0.564 GC content %: 41.114 | |
| Atauschii_AET3Gv20506500.17 AET3Gv20506500.17 |
High | No | 1611 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -23.743 AMFE: -0.554 GC content %: 42.831 | |
| Atauschii_AET3Gv20506500.18 AET3Gv20506500.18 |
High | No | 1773 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -23.525 AMFE: -0.569 GC content %: 41.342 | |
| Atauschii_AET3Gv20506500.19 AET3Gv20506500.19 |
High | No | 1387 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -24.895 AMFE: -0.574 GC content %: 43.403 | |
| Atauschii_AET3Gv20506500.2 AET3Gv20506500.2 |
High | No | 899 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -29.310 AMFE: -0.583 GC content %: 50.278 | |
| Atauschii_AET3Gv20506500.20 AET3Gv20506500.20 |
High | No | 822 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.316 Folding energies... MFEI: -27.105 AMFE: -0.551 GC content %: 49.148 | |
| Atauschii_AET3Gv20506500.21 AET3Gv20506500.21 |
High | No | 664 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -28.087 AMFE: -0.611 GC content %: 45.934 | |
| Atauschii_AET3Gv20506500.3 AET3Gv20506500.3 |
High | No | 1663 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -26.615 AMFE: -0.600 GC content %: 44.378 | |
| Atauschii_AET3Gv20506500.4 AET3Gv20506500.4 |
High | No | 1587 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -27.290 AMFE: -0.606 GC content %: 45.054 | |
| Atauschii_AET3Gv20506500.5 AET3Gv20506500.5 |
High | No | 2295 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -27.407 AMFE: -0.611 GC content %: 44.837 | |
| Atauschii_AET3Gv20506500.6 AET3Gv20506500.6 |
High | No | 2382 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -27.343 AMFE: -0.613 GC content %: 44.626 | |
| Atauschii_AET3Gv20506500.7 AET3Gv20506500.7 |
High | No | 1552 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -25.432 AMFE: -0.570 GC content %: 44.588 | |
| Atauschii_AET3Gv20506500.8 AET3Gv20506500.8 |
High | No | 1380 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -25.464 AMFE: -0.569 GC content %: 44.783 | |
| Atauschii_AET3Gv20506500.9 AET3Gv20506500.9 |
High | No | 1124 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -21.495 AMFE: -0.531 GC content %: 40.480 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
