Atauschii AET3Gv20514600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20514600 [ AET3Gv20514600] |
3D | 288499377 | 288504596 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20514600.1 AET3Gv20514600.1 |
Low | No | 1556 | OG0002363 | Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -35.411 AMFE: -0.670 GC content %: 52.892 | |
| Atauschii_AET3Gv20514600.12 AET3Gv20514600.12 |
Low | No | 1177 | OG0002363 | Get ORF Coding potential... Type: noncoding Potential: -1.224 Folding energies... MFEI: -27.876 AMFE: -0.641 GC content %: 43.500 | |
| Atauschii_AET3Gv20514600.13 AET3Gv20514600.13 |
Low | No | 1249 | OG0002363 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -28.279 AMFE: -0.653 GC content %: 43.315 | |
| Atauschii_AET3Gv20514600.14 AET3Gv20514600.14 |
Low | No | 523 | OG0002363 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -24.990 AMFE: -0.583 GC content %: 42.830 | |
| Atauschii_AET3Gv20514600.2 AET3Gv20514600.2 |
Low | No | 1528 | OG0002363 | Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -35.249 AMFE: -0.669 GC content %: 52.683 | |
| Atauschii_AET3Gv20514600.3 AET3Gv20514600.3 |
Low | No | 1529 | OG0002363 | Get ORF Coding potential... Type: noncoding Potential: -1.189 Folding energies... MFEI: -35.441 AMFE: -0.675 GC content %: 52.518 | |
| Atauschii_AET3Gv20514600.7 AET3Gv20514600.7 |
Low | No | 1638 | OG0002363 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -35.714 AMFE: -0.665 GC content %: 53.724 | |
| Atauschii_AET3Gv20514600.8 AET3Gv20514600.8 |
Low | No | 2169 | OG0002363 | Get ORF Coding potential... Type: noncoding Potential: -1.302 Folding energies... MFEI: -33.767 AMFE: -0.668 GC content %: 50.576 | |
| Atauschii_AET3Gv20514600.9 AET3Gv20514600.9 |
Low | No | 1160 | OG0002363 | Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -30.517 AMFE: -0.647 GC content %: 47.155 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20514600.13 | SwissProt | 2021-04-01 | Q0DDI1 | 4.83e-10 |
| Atauschii_AET3Gv20514600.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET3Gv20514600.9 | SwissProt | 2021-04-01 | Q0DDI1 | 4.35e-10 |
| Atauschii_AET3Gv20514600.14 | SwissProt | 2021-04-01 | Q0DDI1 | 1.13e-10 |
| Atauschii_AET3Gv20514600.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET3Gv20514600.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET3Gv20514600.2 | SwissProt | 2021-04-01 | Q0DDI1 | 6.22e-10 |
| Atauschii_AET3Gv20514600.8 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET3Gv20514600.12 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET3Gv20514600.3 | SwissProt | 2021-04-01 | Q0DDI1 | 6.22e-10 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
