Atauschii AET3Gv20522900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20522900 [ AET3Gv20522900] |
3D | 295972848 | 295976258 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20522900.1 AET3Gv20522900.1 |
High | No | 381 | OG0003721 | Get ORF Coding potential... Type: noncoding Potential: -1.037 Folding energies... MFEI: -23.727 AMFE: -0.646 GC content %: 36.745 | |
| Atauschii_AET3Gv20522900.2 AET3Gv20522900.2 |
High | No | 657 | OG0003721 | Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -31.659 AMFE: -0.650 GC content %: 48.706 | |
| Atauschii_AET3Gv20522900.3 AET3Gv20522900.3 |
High | No | 790 | OG0003721 | Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -32.101 AMFE: -0.647 GC content %: 49.620 | |
| Atauschii_AET3Gv20522900.4 AET3Gv20522900.4 |
High | No | 949 | OG0003721 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -29.905 AMFE: -0.636 GC content %: 46.997 | |
| Atauschii_AET3Gv20522900.5 AET3Gv20522900.5 |
High | No | 234 | OG0003721 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -31.923 AMFE: -0.541 GC content %: 58.974 | |
| Atauschii_AET3Gv20522900.6 AET3Gv20522900.6 |
High | No | 349 | OG0025021 | Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -33.954 AMFE: -0.575 GC content %: 59.026 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
