Atauschii AET3Gv20539300
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20539300 [ AET3Gv20539300] |
3D | 308799691 | 308807245 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20539300.1 AET3Gv20539300.1 |
Low | No | 2327 | OG0004712 | Get ORF Coding potential... Type: noncoding Potential: -1.304 Folding energies... MFEI: -27.396 AMFE: -0.641 GC content %: 42.759 | |
| Atauschii_AET3Gv20539300.12 AET3Gv20539300.12 |
Low | No | 2063 | OG0004712 | Get ORF Coding potential... Type: noncoding Potential: -1.293 Folding energies... MFEI: -23.800 AMFE: -0.658 GC content %: 36.161 | |
| Atauschii_AET3Gv20539300.13 AET3Gv20539300.13 |
Low | No | 1840 | OG0004712 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -24.125 AMFE: -0.641 GC content %: 37.663 | |
| Atauschii_AET3Gv20539300.14 AET3Gv20539300.14 |
Low | No | 2587 | OG0004712 | Get ORF Coding potential... Type: noncoding Potential: -1.312 Folding energies... MFEI: -24.646 AMFE: -0.647 GC content %: 38.114 | |
| Atauschii_AET3Gv20539300.23 AET3Gv20539300.23 |
Low | No | 508 | OG0016208 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -29.665 AMFE: -0.628 GC content %: 47.244 | |
| Atauschii_AET3Gv20539300.24 AET3Gv20539300.24 |
High | No | 502 | OG0016208 | Get ORF Coding potential... Type: noncoding Potential: -1.315 Folding energies... MFEI: -27.729 AMFE: -0.639 GC content %: 43.426 | |
| Atauschii_AET3Gv20539300.4 AET3Gv20539300.4 |
Low | No | 1940 | OG0004712 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -25.711 AMFE: -0.647 GC content %: 39.742 | |
| Atauschii_AET3Gv20539300.6 AET3Gv20539300.6 |
Low | No | 2419 | OG0004712 | Get ORF Coding potential... Type: noncoding Potential: -1.307 Folding energies... MFEI: -27.962 AMFE: -0.645 GC content %: 43.365 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20539300.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Atauschii_AET3Gv20539300.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Atauschii_AET3Gv20539300.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Atauschii_AET3Gv20539300.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Atauschii_AET3Gv20539300.23 | SwissProt | 2021-04-01 | Q0J969 | 1.43e-5 |
| Atauschii_AET3Gv20539300.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Atauschii_AET3Gv20539300.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
