Atauschii AET3Gv20573400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20573400 [ AET3Gv20573400] |
3D | 331663269 | 331695623 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20573400.1 AET3Gv20573400.1 |
High | No | 328 | OG0072873 | Get ORF Coding potential... Type: noncoding Potential: -0.652 Folding energies... MFEI: -28.506 AMFE: -0.547 GC content %: 52.134 | |
| Atauschii_AET3Gv20573400.13 AET3Gv20573400.13 |
High | No | 685 | OG0009920 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -22.000 AMFE: -0.636 GC content %: 34.599 | |
| Atauschii_AET3Gv20573400.14 AET3Gv20573400.14 |
High | No | 2311 | OG0009920 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -26.170 AMFE: -0.596 GC content %: 43.877 | |
| Atauschii_AET3Gv20573400.15 AET3Gv20573400.15 |
High | No | 1933 | OG0009920 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -26.291 AMFE: -0.576 GC content %: 45.629 | |
| Atauschii_AET3Gv20573400.16 AET3Gv20573400.16 |
High | No | 1172 | OG0009920 | Get ORF Coding potential... Type: noncoding Potential: -0.999 Folding energies... MFEI: -27.372 AMFE: -0.567 GC content %: 48.294 | |
| Atauschii_AET3Gv20573400.19 AET3Gv20573400.19 |
High | No | 634 | OG0016211 | Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -30.868 AMFE: -0.704 GC content %: 43.849 | |
| Atauschii_AET3Gv20573400.20 AET3Gv20573400.20 |
Low | No | 1358 | OG0016211 | Get ORF Coding potential... Type: noncoding Potential: -0.933 Folding energies... MFEI: -43.763 AMFE: -0.761 GC content %: 57.511 | |
| Atauschii_AET3Gv20573400.21 AET3Gv20573400.21 |
Low | No | 862 | OG0016211 | Get ORF Coding potential... Type: noncoding Potential: -0.830 Folding energies... MFEI: -51.833 AMFE: -0.777 GC content %: 66.705 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20573400.20 | SwissProt | 2021-04-01 | Q10Q26 | 1.29e-5 |
| Atauschii_AET3Gv20573400.21 | SwissProt | 2021-04-01 | Q10Q26 | 4.22e-6 |
| Atauschii_AET3Gv20573400.20 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET3Gv20573400.21 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
