Atauschii AET3Gv20596700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20596700 [ AET3Gv20596700] |
3D | 347975320 | 347981540 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20596700.12 AET3Gv20596700.12 |
High | No | 2946 | OG0000774 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -29.796 AMFE: -0.637 GC content %: 46.809 | |
| Atauschii_AET3Gv20596700.13 AET3Gv20596700.13 |
High | No | 2456 | OG0000774 | Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -31.242 AMFE: -0.648 GC content %: 48.208 | |
| Atauschii_AET3Gv20596700.14 AET3Gv20596700.14 |
High | No | 2174 | OG0000774 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -31.444 AMFE: -0.643 GC content %: 48.896 | |
| Atauschii_AET3Gv20596700.15 AET3Gv20596700.15 |
High | No | 1200 | OG0000774 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -32.408 AMFE: -0.640 GC content %: 50.667 | |
| Atauschii_AET3Gv20596700.16 AET3Gv20596700.16 |
High | No | 1634 | OG0000774 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -30.337 AMFE: -0.631 GC content %: 48.042 | |
| Atauschii_AET3Gv20596700.17 AET3Gv20596700.17 |
High | No | 1708 | OG0000774 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -30.299 AMFE: -0.630 GC content %: 48.068 | |
| Atauschii_AET3Gv20596700.18 AET3Gv20596700.18 |
High | No | 1572 | OG0000774 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -30.216 AMFE: -0.623 GC content %: 48.473 | |
| Atauschii_AET3Gv20596700.19 AET3Gv20596700.19 |
High | No | 746 | OG0000774 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -40.174 AMFE: -0.672 GC content %: 59.786 | |
| Atauschii_AET3Gv20596700.2 AET3Gv20596700.2 |
High | No | 2700 | OG0000774 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -29.559 AMFE: -0.633 GC content %: 46.704 | |
| Atauschii_AET3Gv20596700.20 AET3Gv20596700.20 |
High | No | 919 | OG0000774 | Get ORF Coding potential... Type: noncoding Potential: -0.943 Folding energies... MFEI: -36.855 AMFE: -0.656 GC content %: 56.148 | |
| Atauschii_AET3Gv20596700.3 AET3Gv20596700.3 |
High | No | 3005 | OG0000774 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -29.128 AMFE: -0.631 GC content %: 46.190 | |
| Atauschii_AET3Gv20596700.4 AET3Gv20596700.4 |
High | No | 2762 | OG0000774 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -29.920 AMFE: -0.637 GC content %: 46.995 | |
| Atauschii_AET3Gv20596700.5 AET3Gv20596700.5 |
High | No | 2693 | OG0000774 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -30.041 AMFE: -0.640 GC content %: 46.974 | |
| Atauschii_AET3Gv20596700.6 AET3Gv20596700.6 |
High | No | 3199 | OG0000774 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -29.375 AMFE: -0.635 GC content %: 46.296 | |
| Atauschii_AET3Gv20596700.8 AET3Gv20596700.8 |
High | No | 2401 | OG0000774 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -30.225 AMFE: -0.637 GC content %: 47.480 | |
| Atauschii_AET3Gv20596700.9 AET3Gv20596700.9 |
High | No | 2764 | OG0000774 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -29.942 AMFE: -0.636 GC content %: 47.106 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
