Atauschii AET3Gv20605100
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20605100 [ AET3Gv20605100] |
3D | 354763022 | 354766288 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20605100.15 AET3Gv20605100.15 |
Low | No | 1656 | OG0003724 | Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -31.081 AMFE: -0.654 GC content %: 47.524 | |
| Atauschii_AET3Gv20605100.2 AET3Gv20605100.2 |
High | No | 1034 | OG0003724 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -33.685 AMFE: -0.644 GC content %: 52.321 | |
| Atauschii_AET3Gv20605100.24 AET3Gv20605100.24 |
High | No | 593 | OG0072932 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -30.894 AMFE: -0.634 GC content %: 48.735 | |
| Atauschii_AET3Gv20605100.29 AET3Gv20605100.29 |
Low | No | 907 | OG0003724 | Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -28.379 AMFE: -0.614 GC content %: 46.196 | |
| Atauschii_AET3Gv20605100.38 AET3Gv20605100.38 |
Low | No | 736 | OG0003724 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -24.823 AMFE: -0.587 GC content %: 42.255 | |
| Atauschii_AET3Gv20605100.7 AET3Gv20605100.7 |
High | No | 1319 | OG0003724 | Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -31.198 AMFE: -0.641 GC content %: 48.673 | |
| Atauschii_AET3Gv20605100.9 AET3Gv20605100.9 |
Low | No | 1437 | OG0003724 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -30.564 AMFE: -0.643 GC content %: 47.530 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20605100.38 | SwissProt | 2021-04-01 | Q04832 | 2.03e-4 |
| Atauschii_AET3Gv20605100.9 | SwissProt | 2021-04-01 | P0CO44 | 7.51e-4 |
| Atauschii_AET3Gv20605100.15 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1-Tx1 | |
| Atauschii_AET3Gv20605100.29 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1-Tx1 | |
| Atauschii_AET3Gv20605100.15 | SwissProt | 2021-04-01 | Q04832 | 4.21e-4 |
| Atauschii_AET3Gv20605100.38 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1-Tx1 | |
| Atauschii_AET3Gv20605100.29 | SwissProt | 2021-04-01 | Q04832 | 4.48e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
