Atauschii AET3Gv20614800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20614800 [ AET3Gv20614800] |
3D | 360601387 | 360607255 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20614800.13 AET3Gv20614800.13 |
Low | No | 3172 | OG0002364 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -35.454 AMFE: -0.757 GC content %: 46.847 | |
| Atauschii_AET3Gv20614800.14 AET3Gv20614800.14 |
Low | No | 2968 | OG0002364 | Get ORF Coding potential... Type: noncoding Potential: -1.295 Folding energies... MFEI: -36.395 AMFE: -0.768 GC content %: 47.406 | |
| Atauschii_AET3Gv20614800.15 AET3Gv20614800.15 |
Low | No | 2954 | OG0002364 | Get ORF Coding potential... Type: noncoding Potential: -1.295 Folding energies... MFEI: -36.354 AMFE: -0.767 GC content %: 47.427 | |
| Atauschii_AET3Gv20614800.16 AET3Gv20614800.16 |
Low | No | 2621 | OG0002364 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -35.885 AMFE: -0.777 GC content %: 46.204 | |
| Atauschii_AET3Gv20614800.17 AET3Gv20614800.17 |
Low | No | 3270 | OG0002364 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -34.037 AMFE: -0.763 GC content %: 44.618 | |
| Atauschii_AET3Gv20614800.18 AET3Gv20614800.18 |
Low | No | 2900 | OG0002364 | Get ORF Coding potential... Type: noncoding Potential: -1.294 Folding energies... MFEI: -35.103 AMFE: -0.777 GC content %: 45.172 | |
| Atauschii_AET3Gv20614800.19 AET3Gv20614800.19 |
Low | No | 4129 | OG0002364 | Get ORF Coding potential... Type: noncoding Potential: -1.302 Folding energies... MFEI: -31.422 AMFE: -0.733 GC content %: 42.843 | |
| Atauschii_AET3Gv20614800.20 AET3Gv20614800.20 |
Low | No | 2591 | OG0002364 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -33.153 AMFE: -0.766 GC content %: 43.304 | |
| Atauschii_AET3Gv20614800.21 AET3Gv20614800.21 |
High | No | 265 | OG0072951 | Get ORF Coding potential... Type: noncoding Potential: -0.883 Folding energies... MFEI: -25.208 AMFE: -0.596 GC content %: 42.264 | |
| Atauschii_AET3Gv20614800.22 AET3Gv20614800.22 |
High | No | 483 | OG0002364 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -25.528 AMFE: -0.636 GC content %: 40.166 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20614800.16 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET3Gv20614800.19 | SwissProt | 2021-04-01 | B6DMK2 | 6.67e-8 |
| Atauschii_AET3Gv20614800.14 | SwissProt | 2021-04-01 | B6DMK2 | 5.81e-8 |
| Atauschii_AET3Gv20614800.17 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET3Gv20614800.20 | SwissProt | 2021-04-01 | B6DMK2 | 4.06e-8 |
| Atauschii_AET3Gv20614800.15 | SwissProt | 2021-04-01 | B6DMK2 | 5.78e-8 |
| Atauschii_AET3Gv20614800.18 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET3Gv20614800.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET3Gv20614800.16 | SwissProt | 2021-04-01 | B6DMK2 | 3.76e-9 |
| Atauschii_AET3Gv20614800.19 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
