GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20650700 [ AET3Gv20650700]	3D	383840487	383847663	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20650700.15 AET3Gv20650700.15	High	No	420	OG0073038		Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -25.738 AMFE: -0.601 GC content %: 42.857
Atauschii_AET3Gv20650700.6 AET3Gv20650700.6	High	No	452	OG0073039		Get ORF Coding potential... Type: noncoding Potential: -0.093 Folding energies... MFEI: -43.717 AMFE: -0.652 GC content %: 67.035
Atauschii_AET3Gv20650700.7 AET3Gv20650700.7	Low	No	283	OG0073040		Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -28.975 AMFE: -0.651 GC content %: 44.523

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET3Gv20650700.7	SwissProt	2021-04-01	A0JMA9	3.73e-9

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).