Atauschii AET3Gv20653300
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20653300 [ AET3Gv20653300] |
3D | 386147558 | 386153270 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20653300.11 AET3Gv20653300.11 |
Low | No | 961 | OG0006893 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -27.482 AMFE: -0.664 GC content %: 41.415 | |
| Atauschii_AET3Gv20653300.12 AET3Gv20653300.12 |
Low | No | 897 | OG0006893 | Get ORF Coding potential... Type: noncoding Potential: -0.895 Folding energies... MFEI: -26.120 AMFE: -0.647 GC content %: 40.357 | |
| Atauschii_AET3Gv20653300.14 AET3Gv20653300.14 |
Low | No | 1625 | OG0001156 | Get ORF Coding potential... Type: noncoding Potential: -0.871 Folding energies... MFEI: -27.575 AMFE: -0.673 GC content %: 40.985 | |
| Atauschii_AET3Gv20653300.17 AET3Gv20653300.17 |
Low | No | 805 | OG0004716 | Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -26.050 AMFE: -0.643 GC content %: 40.497 | |
| Atauschii_AET3Gv20653300.19 AET3Gv20653300.19 |
Low | No | 967 | OG0006893 | Get ORF Coding potential... Type: noncoding Potential: -0.748 Folding energies... MFEI: -27.239 AMFE: -0.660 GC content %: 41.262 | |
| Atauschii_AET3Gv20653300.22 AET3Gv20653300.22 |
Low | No | 670 | OG0004716 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -25.791 AMFE: -0.645 GC content %: 40.000 | |
| Atauschii_AET3Gv20653300.23 AET3Gv20653300.23 |
Low | No | 569 | OG0025052 | Get ORF Coding potential... Type: noncoding Potential: -0.779 Folding energies... MFEI: -27.733 AMFE: -0.649 GC content %: 42.707 | |
| Atauschii_AET3Gv20653300.28 AET3Gv20653300.28 |
High | No | 257 | OG0001156 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -29.728 AMFE: -0.616 GC content %: 48.249 | |
| Atauschii_AET3Gv20653300.3 AET3Gv20653300.3 |
Low | No | 1387 | OG0001156 | Get ORF Coding potential... Type: noncoding Potential: -0.415 Folding energies... MFEI: -27.772 AMFE: -0.655 GC content %: 42.394 | |
| Atauschii_AET3Gv20653300.4 AET3Gv20653300.4 |
Low | No | 422 | OG0006893 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -22.109 AMFE: -0.576 GC content %: 38.389 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20653300.14 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET3Gv20653300.22 | SwissProt | 2021-04-01 | P71020 | 3.9e-5 |
| Atauschii_AET3Gv20653300.11 | SwissProt | 2021-04-01 | P71020 | 3.67e-8 |
| Atauschii_AET3Gv20653300.17 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET3Gv20653300.23 | SwissProt | 2021-04-01 | P71020 | 2.1e-9 |
| Atauschii_AET3Gv20653300.12 | SwissProt | 2021-04-01 | P71020 | 5.52e-7 |
| Atauschii_AET3Gv20653300.19 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET3Gv20653300.3 | SwissProt | 2021-04-01 | P71020 | 2.52e-11 |
| Atauschii_AET3Gv20653300.14 | SwissProt | 2021-04-01 | P71020 | 8.26e-8 |
| Atauschii_AET3Gv20653300.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
