Atauschii AET3Gv20690000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20690000 [ AET3Gv20690000] |
3D | 409863612 | 409866318 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20690000.10 AET3Gv20690000.10 |
High | No | 301 | OG0073132 | Get ORF Coding potential... Type: noncoding Potential: -0.748 Folding energies... MFEI: -41.030 AMFE: -0.611 GC content %: 67.110 | |
| Atauschii_AET3Gv20690000.2 AET3Gv20690000.2 |
High | No | 778 | OG0073133 | Get ORF Coding potential... Type: noncoding Potential: -0.969 Folding energies... MFEI: -31.015 AMFE: -0.580 GC content %: 53.470 | |
| Atauschii_AET3Gv20690000.3 AET3Gv20690000.3 |
High | No | 814 | OG0073134 | Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -32.101 AMFE: -0.609 GC content %: 52.703 | |
| Atauschii_AET3Gv20690000.4 AET3Gv20690000.4 |
High | No | 775 | OG0025066 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -32.129 AMFE: -0.597 GC content %: 53.806 | |
| Atauschii_AET3Gv20690000.5 AET3Gv20690000.5 |
High | No | 961 | OG0025067 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -31.113 AMFE: -0.616 GC content %: 50.468 | |
| Atauschii_AET3Gv20690000.6 AET3Gv20690000.6 |
High | No | 993 | OG0025068 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -29.768 AMFE: -0.608 GC content %: 48.943 | |
| Atauschii_AET3Gv20690000.7 AET3Gv20690000.7 |
High | No | 956 | OG0073135 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -30.659 AMFE: -0.625 GC content %: 49.059 | |
| Atauschii_AET3Gv20690000.8 AET3Gv20690000.8 |
High | No | 770 | OG0073136 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -30.948 AMFE: -0.594 GC content %: 52.078 | |
| Atauschii_AET3Gv20690000.9 AET3Gv20690000.9 |
High | No | 1029 | OG0025069 | Get ORF Coding potential... Type: noncoding Potential: -0.966 Folding energies... MFEI: -30.836 AMFE: -0.636 GC content %: 48.494 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
