Atauschii AET3Gv20696800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20696800 [ AET3Gv20696800] |
3D | 414156487 | 414161074 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20696800.1 AET3Gv20696800.1 |
Low | No | 4448 | OG0001562 | Get ORF Coding potential... Type: noncoding Potential: -0.885 Folding energies... MFEI: -25.847 AMFE: -0.636 GC content %: 40.647 | |
| Atauschii_AET3Gv20696800.10 AET3Gv20696800.10 |
High | No | 2074 | OG0001562 | Get ORF Coding potential... Type: noncoding Potential: -0.813 Folding energies... MFEI: -28.341 AMFE: -0.625 GC content %: 45.323 | |
| Atauschii_AET3Gv20696800.13 AET3Gv20696800.13 |
High | No | 2657 | OG0001562 | Get ORF Coding potential... Type: noncoding Potential: -0.929 Folding energies... MFEI: -26.244 AMFE: -0.614 GC content %: 42.717 | |
| Atauschii_AET3Gv20696800.14 AET3Gv20696800.14 |
High | No | 1824 | OG0001562 | Get ORF Coding potential... Type: noncoding Potential: -0.798 Folding energies... MFEI: -27.324 AMFE: -0.589 GC content %: 46.382 | |
| Atauschii_AET3Gv20696800.16 AET3Gv20696800.16 |
High | No | 1470 | OG0001562 | Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -27.327 AMFE: -0.566 GC content %: 48.299 | |
| Atauschii_AET3Gv20696800.2 AET3Gv20696800.2 |
Low | No | 4465 | OG0001562 | Get ORF Coding potential... Type: noncoding Potential: -0.886 Folding energies... MFEI: -25.884 AMFE: -0.639 GC content %: 40.493 | |
| Atauschii_AET3Gv20696800.4 AET3Gv20696800.4 |
High | No | 2540 | OG0001562 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -27.051 AMFE: -0.640 GC content %: 42.283 | |
| Atauschii_AET3Gv20696800.5 AET3Gv20696800.5 |
High | No | 2592 | OG0001562 | Get ORF Coding potential... Type: noncoding Potential: -0.839 Folding energies... MFEI: -27.419 AMFE: -0.626 GC content %: 43.789 | |
| Atauschii_AET3Gv20696800.6 AET3Gv20696800.6 |
High | No | 1830 | OG0001562 | Get ORF Coding potential... Type: noncoding Potential: -0.854 Folding energies... MFEI: -28.279 AMFE: -0.634 GC content %: 44.590 | |
| Atauschii_AET3Gv20696800.7 AET3Gv20696800.7 |
High | No | 4048 | OG0001562 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -25.580 AMFE: -0.640 GC content %: 39.970 | |
| Atauschii_AET3Gv20696800.9 AET3Gv20696800.9 |
High | No | 1696 | OG0001562 | Get ORF Coding potential... Type: noncoding Potential: -0.788 Folding energies... MFEI: -27.470 AMFE: -0.597 GC content %: 45.991 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20696800.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron | |
| Atauschii_AET3Gv20696800.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
