GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20715700 [ AET3Gv20715700]	3D	426333556	426339493	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20715700.1 AET3Gv20715700.1	High	No	2638	OG0002367		Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -25.008 AMFE: -0.630 GC content %: 39.689
Atauschii_AET3Gv20715700.2 AET3Gv20715700.2	Low	No	2398	OG0002367		Get ORF Coding potential... Type: noncoding Potential: -0.211 Folding energies... MFEI: -26.172 AMFE: -0.637 GC content %: 41.118

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET3Gv20715700.2	SwissProt	2021-04-01	Q93ZR6	1.42e-13

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).