Atauschii AET3Gv20722600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20722600 [ AET3Gv20722600] |
3D | 430227268 | 430252788 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20722600.1 AET3Gv20722600.1 |
Low | No | 1017 | OG0016232 | Get ORF Coding potential... Type: noncoding Potential: -0.836 Folding energies... MFEI: -23.540 AMFE: -0.561 GC content %: 41.986 | |
| Atauschii_AET3Gv20722600.15 AET3Gv20722600.15 |
High | No | 489 | OG0016232 | Get ORF Coding potential... Type: noncoding Potential: -1.405 Folding energies... MFEI: -23.027 AMFE: -0.552 GC content %: 41.718 | |
| Atauschii_AET3Gv20722600.16 AET3Gv20722600.16 |
High | No | 457 | OG0016232 | Get ORF Coding potential... Type: noncoding Potential: -1.455 Folding energies... MFEI: -22.976 AMFE: -0.553 GC content %: 41.575 | |
| Atauschii_AET3Gv20722600.25 AET3Gv20722600.25 |
Low | No | 2306 | OG0006895 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -34.224 AMFE: -0.677 GC content %: 50.520 | |
| Atauschii_AET3Gv20722600.3 AET3Gv20722600.3 |
High | No | 462 | OG0073193 | Get ORF Coding potential... Type: noncoding Potential: -1.331 Folding energies... MFEI: -23.377 AMFE: -0.584 GC content %: 40.043 | |
| Atauschii_AET3Gv20722600.6 AET3Gv20722600.6 |
Low | No | 2367 | OG0006895 | Get ORF Coding potential... Type: noncoding Potential: -0.642 Folding energies... MFEI: -23.942 AMFE: -0.573 GC content %: 41.783 | |
| Atauschii_AET3Gv20722600.7 AET3Gv20722600.7 |
Low | No | 4227 | OG0006895 | Get ORF Coding potential... Type: noncoding Potential: -0.725 Folding energies... MFEI: -29.506 AMFE: -0.643 GC content %: 45.895 | |
| Atauschii_AET3Gv20722600.8 AET3Gv20722600.8 |
Low | Yes | 5489 | OG0006895 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -28.861 AMFE: -0.662 GC content %: 43.578 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20722600.1 | SwissProt | 2021-04-01 | Q91VU7 | 3.48e-4 |
| Atauschii_AET3Gv20722600.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LINE/L1 | |
| Atauschii_AET3Gv20722600.25 | SwissProt | 2021-04-01 | Q91VU7 | 5.17e-5 |
| Atauschii_AET3Gv20722600.6 | SwissProt | 2021-04-01 | Q08647 | 7.62e-8 |
| Atauschii_AET3Gv20722600.8 | Rfam | 14.6 | MIR1122 | 4.5e-9 |
| Atauschii_AET3Gv20722600.6 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET3Gv20722600.7 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
