GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20725000 [ AET3Gv20725000]	3D	431419649	431434667	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20725000.2 AET3Gv20725000.2	High	No	481	OG0073198		Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -22.703 AMFE: -0.459 GC content %: 49.480
Atauschii_AET3Gv20725000.3 AET3Gv20725000.3	Low	No	708	OG0073199		Get ORF Coding potential... Type: noncoding Potential: -1.270 Folding energies... MFEI: -22.966 AMFE: -0.535 GC content %: 42.938
Atauschii_AET3Gv20725000.31 AET3Gv20725000.31	High	No	234	OG0073200		Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -25.812 AMFE: -0.476 GC content %: 54.274

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET3Gv20725000.3	RepBase (RepeatMasker)	2014-01-31	DNA/MULE-MuDR

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).