Atauschii AET3Gv20759400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20759400 [ AET3Gv20759400] |
3D | 448655440 | 448906665 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20759400.12 AET3Gv20759400.12 |
High | No | 568 | OG0025086 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -26.373 AMFE: -0.531 GC content %: 49.648 | |
| Atauschii_AET3Gv20759400.14 AET3Gv20759400.14 |
High | No | 518 | OG0025087 | Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -39.228 AMFE: -0.629 GC content %: 62.355 | |
| Atauschii_AET3Gv20759400.15 AET3Gv20759400.15 |
Low | No | 804 | OG0025087 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -28.706 AMFE: -0.599 GC content %: 47.886 | |
| Atauschii_AET3Gv20759400.20 AET3Gv20759400.20 |
High | No | 414 | OG0073259 | Get ORF Coding potential... Type: noncoding Potential: -1.447 Folding energies... MFEI: -20.700 AMFE: -0.536 GC content %: 38.647 | |
| Atauschii_AET3Gv20759400.3 AET3Gv20759400.3 |
High | No | 813 | OG0025086 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -34.465 AMFE: -0.617 GC content %: 55.843 | |
| Atauschii_AET3Gv20759400.41 AET3Gv20759400.41 |
Low | No | 1429 | OG0073260 | Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -29.685 AMFE: -0.606 GC content %: 48.985 | |
| Atauschii_AET3Gv20759400.46 AET3Gv20759400.46 |
Low | No | 409 | OG0073261 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -19.242 AMFE: -0.570 GC content %: 33.741 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20759400.15 | SwissProt | 2021-04-01 | Q9FZB1 | 2.48e-7 |
| Atauschii_AET3Gv20759400.46 | SwissProt | 2021-04-01 | C0LGD9 | 2.8e-9 |
| Atauschii_AET3Gv20759400.41 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
