Atauschii AET3Gv20779100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20779100 [ AET3Gv20779100] |
3D | 458106057 | 458110465 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20779100.1 AET3Gv20779100.1 |
Low | No | 1060 | OG0000691 | Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -30.198 AMFE: -0.668 GC content %: 45.189 | |
| Atauschii_AET3Gv20779100.10 AET3Gv20779100.10 |
Low | No | 1685 | OG0000691 | Get ORF Coding potential... Type: noncoding Potential: -0.060 Folding energies... MFEI: -34.837 AMFE: -0.667 GC content %: 52.226 | |
| Atauschii_AET3Gv20779100.11 AET3Gv20779100.11 |
Low | No | 1777 | OG0000691 | Get ORF Coding potential... Type: noncoding Potential: -0.080 Folding energies... MFEI: -34.772 AMFE: -0.662 GC content %: 52.504 | |
| Atauschii_AET3Gv20779100.12 AET3Gv20779100.12 |
Low | No | 1654 | OG0000691 | Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -35.756 AMFE: -0.662 GC content %: 53.990 | |
| Atauschii_AET3Gv20779100.13 AET3Gv20779100.13 |
Low | No | 1601 | OG0000691 | Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -35.803 AMFE: -0.660 GC content %: 54.279 | |
| Atauschii_AET3Gv20779100.14 AET3Gv20779100.14 |
Low | No | 1618 | OG0000691 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -35.637 AMFE: -0.657 GC content %: 54.203 | |
| Atauschii_AET3Gv20779100.15 AET3Gv20779100.15 |
Low | No | 1384 | OG0000691 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -35.882 AMFE: -0.675 GC content %: 53.179 | |
| Atauschii_AET3Gv20779100.16 AET3Gv20779100.16 |
Low | No | 848 | OG0000691 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -34.422 AMFE: -0.692 GC content %: 49.764 | |
| Atauschii_AET3Gv20779100.17 AET3Gv20779100.17 |
Low | No | 1290 | OG0000691 | Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -36.442 AMFE: -0.665 GC content %: 54.806 | |
| Atauschii_AET3Gv20779100.18 AET3Gv20779100.18 |
High | No | 359 | OG0073304 | Get ORF Coding potential... Type: noncoding Potential: -0.961 Folding energies... MFEI: -44.763 AMFE: -0.653 GC content %: 68.524 | |
| Atauschii_AET3Gv20779100.2 AET3Gv20779100.2 |
Low | No | 1105 | OG0000691 | Get ORF Coding potential... Type: noncoding Potential: -0.744 Folding energies... MFEI: -27.167 AMFE: -0.637 GC content %: 42.624 | |
| Atauschii_AET3Gv20779100.3 AET3Gv20779100.3 |
Low | No | 3551 | OG0000691 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -26.004 AMFE: -0.683 GC content %: 38.046 | |
| Atauschii_AET3Gv20779100.4 AET3Gv20779100.4 |
Low | No | 1326 | OG0000691 | Get ORF Coding potential... Type: noncoding Potential: -0.011 Folding energies... MFEI: -27.270 AMFE: -0.642 GC content %: 42.459 | |
| Atauschii_AET3Gv20779100.5 AET3Gv20779100.5 |
Low | No | 1057 | OG0000691 | Get ORF Coding potential... Type: noncoding Potential: -0.825 Folding energies... MFEI: -28.713 AMFE: -0.651 GC content %: 44.087 | |
| Atauschii_AET3Gv20779100.6 AET3Gv20779100.6 |
Low | No | 1198 | OG0000691 | Get ORF Coding potential... Type: noncoding Potential: -0.853 Folding energies... MFEI: -33.264 AMFE: -0.694 GC content %: 47.913 | |
| Atauschii_AET3Gv20779100.7 AET3Gv20779100.7 |
Low | No | 1761 | OG0000691 | Get ORF Coding potential... Type: noncoding Potential: -0.069 Folding energies... MFEI: -34.673 AMFE: -0.668 GC content %: 51.902 | |
| Atauschii_AET3Gv20779100.8 AET3Gv20779100.8 |
Low | No | 1405 | OG0000691 | Get ORF Coding potential... Type: noncoding Potential: -0.795 Folding energies... MFEI: -36.285 AMFE: -0.664 GC content %: 54.662 | |
| Atauschii_AET3Gv20779100.9 AET3Gv20779100.9 |
Low | No | 1422 | OG0000691 | Get ORF Coding potential... Type: noncoding Potential: -0.798 Folding energies... MFEI: -36.034 AMFE: -0.660 GC content %: 54.571 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20779100.3 | SwissProt | 2021-04-01 | Q6ZGP8 | 7.06e-8 |
| Atauschii_AET3Gv20779100.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET3Gv20779100.11 | SwissProt | 2021-04-01 | O94387 | 8.64e-14 |
| Atauschii_AET3Gv20779100.13 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET3Gv20779100.9 | SwissProt | 2021-04-01 | Q6ZGP8 | 1.03e-8 |
| Atauschii_AET3Gv20779100.4 | SwissProt | 2021-04-01 | O94387 | 6.05e-14 |
| Atauschii_AET3Gv20779100.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET3Gv20779100.12 | SwissProt | 2021-04-01 | Q6ZGP8 | 1.2e-8 |
| Atauschii_AET3Gv20779100.14 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET3Gv20779100.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
