Atauschii AET3Gv20803700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20803700 [ AET3Gv20803700] |
3D | 470312816 | 470315224 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20803700.1 AET3Gv20803700.1 |
High | No | 2343 | OG0001157 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -28.775 AMFE: -0.583 GC content %: 49.381 | |
| Atauschii_AET3Gv20803700.2 AET3Gv20803700.2 |
High | No | 1280 | OG0001157 | Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -30.406 AMFE: -0.551 GC content %: 55.156 | |
| Atauschii_AET3Gv20803700.3 AET3Gv20803700.3 |
High | No | 1364 | OG0001157 | Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -30.132 AMFE: -0.552 GC content %: 54.545 | |
| Atauschii_AET3Gv20803700.4 AET3Gv20803700.4 |
High | No | 1570 | OG0001157 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -29.981 AMFE: -0.568 GC content %: 52.739 | |
| Atauschii_AET3Gv20803700.5 AET3Gv20803700.5 |
High | No | 1175 | OG0001157 | Get ORF Coding potential... Type: noncoding Potential: -0.645 Folding energies... MFEI: -31.285 AMFE: -0.541 GC content %: 57.787 | |
| Atauschii_AET3Gv20803700.6 AET3Gv20803700.6 |
High | No | 1782 | OG0001157 | Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -28.316 AMFE: -0.556 GC content %: 50.954 | |
| Atauschii_AET3Gv20803700.7 AET3Gv20803700.7 |
High | No | 1588 | OG0001157 | Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -29.389 AMFE: -0.573 GC content %: 51.322 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
