Atauschii AET3Gv20807200
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20807200 [ AET3Gv20807200] |
3D | 471889809 | 471895970 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20807200.1 AET3Gv20807200.1 |
Low | No | 2033 | OG0003730 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -30.566 AMFE: -0.695 GC content %: 43.974 | |
| Atauschii_AET3Gv20807200.10 AET3Gv20807200.10 |
Low | No | 2310 | OG0003730 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -29.632 AMFE: -0.689 GC content %: 42.987 | |
| Atauschii_AET3Gv20807200.11 AET3Gv20807200.11 |
Low | No | 2046 | OG0003730 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -30.059 AMFE: -0.700 GC content %: 42.913 | |
| Atauschii_AET3Gv20807200.12 AET3Gv20807200.12 |
Low | No | 1264 | OG0003730 | Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -29.644 AMFE: -0.686 GC content %: 43.196 | |
| Atauschii_AET3Gv20807200.13 AET3Gv20807200.13 |
Low | No | 950 | OG0003730 | Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -25.516 AMFE: -0.626 GC content %: 40.737 | |
| Atauschii_AET3Gv20807200.14 AET3Gv20807200.14 |
Low | No | 520 | OG0003730 | Get ORF Coding potential... Type: noncoding Potential: -1.317 Folding energies... MFEI: -24.346 AMFE: -0.612 GC content %: 39.808 | |
| Atauschii_AET3Gv20807200.9 AET3Gv20807200.9 |
Low | No | 1849 | OG0003730 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -29.805 AMFE: -0.695 GC content %: 42.888 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20807200.9 | SwissProt | 2021-04-01 | Q9SAG4 | 1.28e-4 |
| Atauschii_AET3Gv20807200.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET3Gv20807200.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET3Gv20807200.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LINE/L1; LTR/Pao | |
| Atauschii_AET3Gv20807200.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LINE/L1; LTR/Pao | |
| Atauschii_AET3Gv20807200.1 | SwissProt | 2021-04-01 | Q9SAG4 | 1.46e-4 |
| Atauschii_AET3Gv20807200.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LINE/L1 | |
| Atauschii_AET3Gv20807200.10 | SwissProt | 2021-04-01 | Q9SAG4 | 1.73e-4 |
| Atauschii_AET3Gv20807200.12 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET3Gv20807200.11 | SwissProt | 2021-04-01 | Q9SAG4 | 1.06e-4 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
