Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20809300 [ AET3Gv20809300] |
3D | 472618294 | 472621133 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20809300.1 AET3Gv20809300.1 |
Low | No | 1072 | OG0009942 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -36.558 AMFE: -0.653 GC content %: 55.970 | |
Atauschii_AET3Gv20809300.2 AET3Gv20809300.2 |
Low | No | 1227 | OG0009942 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -35.827 AMFE: -0.643 GC content %: 55.746 | |
Atauschii_AET3Gv20809300.3 AET3Gv20809300.3 |
High | No | 1089 | OG0009942 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -41.478 AMFE: -0.909 GC content %: 45.638 | |
Atauschii_AET3Gv20809300.4 AET3Gv20809300.4 |
High | No | 1507 | OG0009942 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -34.230 AMFE: -0.664 GC content %: 51.559 | |
Atauschii_AET3Gv20809300.5 AET3Gv20809300.5 |
High | No | 375 | OG0073370 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -36.347 AMFE: -0.561 GC content %: 64.800 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET3Gv20809300.1 | SwissProt | 2021-04-01 | Q7Y232 | 2.15e-6 |
Atauschii_AET3Gv20809300.2 | SwissProt | 2021-04-01 | Q7Y232 | 2.82e-6 |