Atauschii AET3Gv20844500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20844500 [ AET3Gv20844500] |
3D | 493057267 | 493061775 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20844500.14 AET3Gv20844500.14 |
High | No | 1577 | OG0003732 | Get ORF Coding potential... Type: noncoding Potential: -1.011 Folding energies... MFEI: -30.507 AMFE: -0.660 GC content %: 46.227 | |
| Atauschii_AET3Gv20844500.24 AET3Gv20844500.24 |
High | No | 1054 | OG0003732 | Get ORF Coding potential... Type: noncoding Potential: -0.812 Folding energies... MFEI: -34.070 AMFE: -0.649 GC content %: 52.467 | |
| Atauschii_AET3Gv20844500.30 AET3Gv20844500.30 |
High | No | 1622 | OG0003732 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -29.636 AMFE: -0.682 GC content %: 43.465 | |
| Atauschii_AET3Gv20844500.35 AET3Gv20844500.35 |
High | No | 879 | OG0003732 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -27.133 AMFE: -0.670 GC content %: 40.501 | |
| Atauschii_AET3Gv20844500.8 AET3Gv20844500.8 |
High | No | 1065 | OG0003732 | Get ORF Coding potential... Type: noncoding Potential: -0.762 Folding energies... MFEI: -34.347 AMFE: -0.652 GC content %: 52.676 | |
| Atauschii_AET3Gv20844500.9 AET3Gv20844500.9 |
High | No | 2315 | OG0003732 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -29.901 AMFE: -0.666 GC content %: 44.881 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
