Atauschii AET3Gv20898100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20898100 [ AET3Gv20898100] |
3D | 520512766 | 520515450 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20898100.10 AET3Gv20898100.10 |
High | No | 292 | OG0016245 | Get ORF Coding potential... Type: noncoding Potential: -0.867 Folding energies... MFEI: -21.370 AMFE: -0.439 GC content %: 48.630 | |
| Atauschii_AET3Gv20898100.11 AET3Gv20898100.11 |
High | No | 371 | OG0016245 | Get ORF Coding potential... Type: noncoding Potential: -0.768 Folding energies... MFEI: -23.450 AMFE: -0.494 GC content %: 47.439 | |
| Atauschii_AET3Gv20898100.12 AET3Gv20898100.12 |
High | No | 326 | OG0016245 | Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -23.957 AMFE: -0.542 GC content %: 44.172 | |
| Atauschii_AET3Gv20898100.4 AET3Gv20898100.4 |
High | No | 391 | OG0016246 | Get ORF Coding potential... Type: noncoding Potential: -0.766 Folding energies... MFEI: -25.473 AMFE: -0.488 GC content %: 52.174 | |
| Atauschii_AET3Gv20898100.7 AET3Gv20898100.7 |
High | No | 379 | OG0016246 | Get ORF Coding potential... Type: noncoding Potential: -0.770 Folding energies... MFEI: -25.145 AMFE: -0.489 GC content %: 51.451 | |
| Atauschii_AET3Gv20898100.9 AET3Gv20898100.9 |
High | No | 468 | OG0016246 | Get ORF Coding potential... Type: noncoding Potential: -0.528 Folding energies... MFEI: -23.739 AMFE: -0.500 GC content %: 47.436 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
