GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20914400 [ AET3Gv20914400]	3D	526407711	526409890	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20914400.1 AET3Gv20914400.1	High	No	1600	OG0006911		Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -29.531 AMFE: -0.619 GC content %: 47.688
Atauschii_AET3Gv20914400.2 AET3Gv20914400.2	High	No	1602	OG0006911		Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -28.870 AMFE: -0.637 GC content %: 45.318
Atauschii_AET3Gv20914400.3 AET3Gv20914400.3	High	No	752	OG0006911		Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -34.747 AMFE: -0.645 GC content %: 53.856
Atauschii_AET3Gv20914400.4 AET3Gv20914400.4	High	No	766	OG0006911		Get ORF Coding potential... Type: noncoding Potential: -1.222 Folding energies... MFEI: -35.339 AMFE: -0.634 GC content %: 55.744
Atauschii_AET3Gv20914400.5 AET3Gv20914400.5	High	No	762	OG0006911		Get ORF Coding potential... Type: noncoding Potential: -1.220 Folding energies... MFEI: -34.803 AMFE: -0.668 GC content %: 52.100

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).